PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60783
Common NameMICPUN_60783
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 572aa    MW: 60873.3 Da    PI: 6.297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60783genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.6e-14228278156
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
            s+y+GV+ + ++grW+A+I++       k+++lg f+++++Aa a++ a+ k +ge
  60783 228 SKYRGVTHHCRTGRWEAHIWED-----GKQVYLGGFDSEQQAALAYDVAAIKCRGE 278
            89*******************3.....3**********99************9986 PP
2AP235.42.6e-11320368153
    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
            s+++GV+++  +grW+A+I   +   g rk+ +lg ++ aeeAa a++  + + 
  60783 320 SKFRGVTRHQ-KGRWEARIGQlV---G-RKYRYLGLYDQAEEAAVAYDTEAVRQ 368
            79*****999.7******99977...3.6*******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-19228285No hitNo description
PfamPF008477.3E-10228278IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-16228286IPR016177DNA-binding domain
SMARTSM003807.9E-29229291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-16229285IPR001471AP2/ERF domain
PROSITE profilePS5103217.148229285IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-15320379IPR016177DNA-binding domain
CDDcd000182.21E-17320380No hitNo description
PfamPF008475.6E-5320362IPR001471AP2/ERF domain
SMARTSM003809.6E-25321384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-14321379IPR001471AP2/ERF domain
PROSITE profilePS5103215.145321378IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPRLSAVEGD DASPLYRRAP PLASKLEHVE APVDPTSSPF KHAALADFDE ALASFASSEM  60
FRMCDVGDPW TTNGLELSAS SGQTREDAAF AHAMGGGGGG GGGGGGGGGG GGGGGAGGGG  120
GAGDDPLVAL ASRHRYGHAN VLVPDGNPWW SDPLERNVAA PNAGPTHPGL FALTPAQRHA  180
LREPRDDAFD PPAPAPQRKR RDVAKRKRDG ISRQGFGDTP KRGTRTTSKY RGVTHHCRTG  240
RWEAHIWEDG KQVYLGGFDS EQQAALAYDV AAIKCRGEEA STNFDMNDYA QELAALNSVG  300
KEELVLSLRR QSKGFVKGSS KFRGVTRHQK GRWEARIGQL VGRKYRYLGL YDQAEEAAVA  360
YDTEAVRQKG FDAVTNFDLS EYADVLAEHH ALRRARRTLS HPIPEPDDPN APASLPAASI  420
KQRLKAASES SFGGMREGPA AEREPRGEAI DAVRAFFRDA GVEKALTPMD PIREMATNAG  480
NAAAAVAAAR ERNARTTWAP MNDKGTLLDD EGDLEEEDVG GGGKTTIQAL RAMVREARTQ  540
LASTQRQLEV AMIGTDDGMG TGDRDVDEGK N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207KRRDVAKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507962.10.0AP2-like protein
TrEMBLC1FG960.0C1FG96_MICCC; AP2-like protein
STRINGXP_002507962.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-53AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]