PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

60184

Common Name

MICPUN_60184

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

G2-like

Protein Properties

Length: 467aa MW: 49789.8 Da PI: 5.974

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60184	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	187	241	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtpeLH+rFv+av++LGG e AtPk i++lm+v+g+t++hvkSHLQkYRl 60184 187 KMRLRWTPELHKRFVDAVNRLGGLELATPKGIMQLMEVDGMTIQHVKSHLQKYRL 241 67****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.388	184	244	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-30	185	242	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	187	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	187	242	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	189	240	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-12	401	442	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0055063	Biological Process	sulfate ion homeostasis
GO:0071486	Biological Process	cellular response to high light intensity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MAHETTFWPE FNEDGGADED QAIDDFLNVL LEIDTETLES QGEGGGGTAK GKISSSRGDR 60 IRAEASVADP RGTSYSRGVG AVFDEGAHHH HLSHETAAAD LLTQHQLRQQ VDTQMSSHAR 120 HLSDPMAGTG GQFGGIGDGW HPPGMADFSI FAQQFQHNNP ALGGFGVAGS ATARDRTAGP 180 NGGNDGKMRL RWTPELHKRF VDAVNRLGGL ELATPKGIMQ LMEVDGMTIQ HVKSHLQKYR 240 LQDPGDRDVL DGDGKRGREG DDAGAAAGGK RVRRRPSAAE RSAARARAAE QKAREEREAA 300 AAAAAAAAEA AAEAIDAERR MSSGGHGDLL GMEGGHHVPP YANTGALMTT IDTTSGLPSV 360 AHDHGARLAL LGVEDDDHLE TAARAAGLGT AGRSPEDVSI ALMKQIEMQS QLHAQLMEQR 420 KLQQRIEAHG KYLESILERQ QRQQHQQHQN KVHGDDEDGM PPGSLS*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MAHETTFWPE FNEDGGADED QAIDDFLNVL LEIDTETLES QGEGGGGTAK GKISSSRGDR  60
IRAEASVADP RGTSYSRGVG AVFDEGAHHH HLSHETAAAD LLTQHQLRQQ VDTQMSSHAR  120
HLSDPMAGTG GQFGGIGDGW HPPGMADFSI FAQQFQHNNP ALGGFGVAGS ATARDRTAGP  180
NGGNDGKMRL RWTPELHKRF VDAVNRLGGL ELATPKGIMQ LMEVDGMTIQ HVKSHLQKYR  240
LQDPGDRDVL DGDGKRGREG DDAGAAAGGK RVRRRPSAAE RSAARARAAE QKAREEREAA  300
AAAAAAAAEA AAEAIDAERR MSSGGHGDLL GMEGGHHVPP YANTGALMTT IDTTSGLPSV  360
AHDHGARLAL LGVEDDDHLE TAARAAGLGT AGRSPEDVSI ALMKQIEMQS QLHAQLMEQR  420
KLQQRIEAHG KYLESILERQ QRQQHQQHQN KVHGDDEDGM PPGSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	186	240	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001328	0.0	CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504000.1	0.0	g2-like myb family transcription factor
TrEMBL	C1EAT0	0.0	C1EAT0_MICCC; G2-like myb family transcription factor
STRING	XP_002504000.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	4e-22	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	60184
Entrez Gene	8245290

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]