PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 60106 | ||||||||
Common Name | MICPUN_60106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | NF-YB | ||||||||
Protein Properties | Length: 152aa MW: 16253 Da PI: 4.4916 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.6 | 6e-13 | 39 | 107 | 24 | 92 |
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++ + k+a ec+ fi +ts a+d c+ kr+ti+ dd++ a+ +l f ++ eplk l+ +++ 60106 39 DGHVQKEALLAFGECAKIFIHILTSTANDICRDGKRQTISVDDVFKAVEELEFGEFGEPLKEALAAFKK 107 4678888888999*************************************************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-36 | 7 | 147 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.42E-25 | 8 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-8 | 39 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSEPQDDLPR AHIKRIVKAK LTALMNEGGP DAKGNKAPDG HVQKEALLAF GECAKIFIHI 60 LTSTANDICR DGKRQTISVD DVFKAVEELE FGEFGEPLKE ALAAFKKDAA AKSAKRNDAA 120 TKKRKAEEDD AAGEGEEDAE EEADEEAAEG A* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001328 | 1e-173 | CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002503619.1 | 1e-103 | predicted protein | ||||
TrEMBL | C1EAK8 | 1e-101 | C1EAK8_MICCC; Uncharacterized protein | ||||
STRING | XP_002503619.1 | 1e-102 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-21 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | 60106 |
Entrez Gene | 8245254 |
Publications ? help Back to Top | |||
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