PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59800
Common NameMICPUN_59800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HSF
Protein Properties Length: 505aa    MW: 53499.6 Da    PI: 10.9002
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59800genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.91e-211775260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y  le+e+++++isws++g+ f v+d ++f+++v+p++F h+nf+SFvRQLn Y
         59800 17 FLRKVYMFLEEERYRNIISWSDDGKHFTVHDVNRFTTDVMPEHFSHTNFSSFVRQLNSY 75
                  9*********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-2413193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-241583IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-171575IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2017193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-81740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-85567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-86880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-24161193IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MATDVDGRRH FGLAPRFLRK VYMFLEEERY RNIISWSDDG KHFTVHDVNR FTTDVMPEHF  60
SHTNFSSFVR QLNSYVSPAP IRPDPRPERP RISLRLVVGI VTASRSPTPP RGLAHDRPPP  120
PISAFPMVFV VNQRARGATR LVFIWVSSQH VLLTSPPHLT SQGFRKVDQA SWSFANPGFF  180
KGGAENLKFI ERKGLEGGRG GRGGRGNTRG YAGAGAYGRL GRMAGTRGLG LNVGGGAMDG  240
HLLQDNPQDT FEAIVTQQLQ LSRIEMANLM HRLTSVEKVQ EQLLGILINQ QTTMLNGASA  300
PTAATPIPAT SSTSTSLPAS VFSGHTGAAA AMAVGSGTHG SILPAHLQQH LQQHLQQRHM  360
NQQHAQQLHL NQQQLQQLQS QQPQQLDLGG ITIREAPLMQ SQNASALAPK PEPAPPPPVK  420
PNDPALQTLA SISGLSNQLA GVSPILGLGL DSAGTGLDPG SGAGGGAGLA GVGGSLANGA  480
GLNLGGLGAG LAAQPGLLHP RQYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B7e-171775462Putative transcription factor
5d5x_B7e-171775462Putative transcription factor
5d5x_E7e-171775462Putative transcription factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503815.10.0heat shock transcription factor
TrEMBLC1E9Q10.0C1E9Q1_MICCC; Heat shock transcription factor
STRINGXP_002503815.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-14heat shock transcription factor B2A
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]