PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59800 | ||||||||
Common Name | MICPUN_59800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HSF | ||||||||
Protein Properties | Length: 505aa MW: 53499.6 Da PI: 10.9002 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 68.9 | 1e-21 | 17 | 75 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y le+e+++++isws++g+ f v+d ++f+++v+p++F h+nf+SFvRQLn Y 59800 17 FLRKVYMFLEEERYRNIISWSDDGKHFTVHDVNRFTTDVMPEHFSHTNFSSFVRQLNSY 75 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.3E-24 | 13 | 193 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-24 | 15 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.13E-17 | 15 | 75 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-20 | 17 | 193 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-8 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-8 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-8 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-24 | 161 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MATDVDGRRH FGLAPRFLRK VYMFLEEERY RNIISWSDDG KHFTVHDVNR FTTDVMPEHF 60 SHTNFSSFVR QLNSYVSPAP IRPDPRPERP RISLRLVVGI VTASRSPTPP RGLAHDRPPP 120 PISAFPMVFV VNQRARGATR LVFIWVSSQH VLLTSPPHLT SQGFRKVDQA SWSFANPGFF 180 KGGAENLKFI ERKGLEGGRG GRGGRGNTRG YAGAGAYGRL GRMAGTRGLG LNVGGGAMDG 240 HLLQDNPQDT FEAIVTQQLQ LSRIEMANLM HRLTSVEKVQ EQLLGILINQ QTTMLNGASA 300 PTAATPIPAT SSTSTSLPAS VFSGHTGAAA AMAVGSGTHG SILPAHLQQH LQQHLQQRHM 360 NQQHAQQLHL NQQQLQQLQS QQPQQLDLGG ITIREAPLMQ SQNASALAPK PEPAPPPPVK 420 PNDPALQTLA SISGLSNQLA GVSPILGLGL DSAGTGLDPG SGAGGGAGLA GVGGSLANGA 480 GLNLGGLGAG LAAQPGLLHP RQYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 7e-17 | 17 | 75 | 4 | 62 | Putative transcription factor |
5d5x_B | 7e-17 | 17 | 75 | 4 | 62 | Putative transcription factor |
5d5x_E | 7e-17 | 17 | 75 | 4 | 62 | Putative transcription factor |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001328 | 0.0 | CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002503815.1 | 0.0 | heat shock transcription factor | ||||
TrEMBL | C1E9Q1 | 0.0 | C1E9Q1_MICCC; Heat shock transcription factor | ||||
STRING | XP_002503815.1 | 0.0 | (Micromonas sp. RCC299) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 9e-14 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | 59800 |
Entrez Gene | 8245105 |
Publications ? help Back to Top | |||
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