PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59665
Common NameMICPUN_59665
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 724aa    MW: 74086.6 Da    PI: 6.8268
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59665genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.5e-14180217136
   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
            CsnCg t+  Tpl+Rrgp+g ++LCnaCGl ++++g++
  59665 180 CSNCGCTShaTPLMRRGPNGVRSLCNACGLWFARRGTM 217
            *********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.85E-10173221No hitNo description
PROSITE profilePS5011412.993174220IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-9174227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14178220IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-15179227No hitNo description
PfamPF003202.5E-11180217IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MAAPMTPKTE KEDDVKESSA RRRSGRVRAI HARQAELKAK EISFRCLPAP HAEVTVKSLG  60
ACKEDATVEN GGRRPDGALV PLGYRAEGLL FNEPLEVWID QAGAHFLRWG AEGDGRRRVA  120
TSPDGAANAR DAVRCIALEL ARRVDHDVAP VLPPLPPPAA PTAPPTSSRG SNSKKGGRAC  180
SNCGCTSHAT PLMRRGPNGV RSLCNACGLW FARRGTMRPV EGGPIGPAVP VDVVAPDTAV  240
SVADTAVTHT AVDTAVAAPD TAAALDSLGD DADVADNSVV PPPLAPPTDD VKAEIAEILG  300
KRPPLNSSGV EGKDGAADVN VPRKTTSERS GNSSVAAPGS PTRDSDLNAA PASESSGGDG  360
GVVVTVVVKN EPGTLKGDSS SAGAADDDKS VVAAAAEKSR AIAYAAQCVA HMASDACGDG  420
VFGYADPPVQ QALIALREAR ADADDATIEA AELAIAAAIA AGAAAAARSG QALEAPAGGG  480
RVGGRGGRRA NGGAGKPLNV KAAAAAKSKG GQPAKQQAGK RGAGKQGGRA AKQQKGQRAQ  540
AAWKTAGHDA SSSYRSNFTQ QQVDNAGHTG GYVAQQQMMY QMNGAHQLGP AQGVYMQGSG  600
GGWQTQGMSQ VPAGVNGVIV NGHYQQMPAH ASYHHQPQPQ QQQQWGYQQD LANAGMMQQQ  660
MHHGQMQQQQ MSMVPSMGDF GDFGGFSANE LEAAVGSIGN MDNDLGMGLL MDEGMMGMEG  720
GLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503388.10.0predicted protein
TrEMBLC1E9A70.0C1E9A7_MICCC; Uncharacterized protein
STRINGXP_002503388.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP813455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-12GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]