PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59110

Common Name

MICPUN_59110

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB_related

Protein Properties

Length: 489aa MW: 53339.5 Da PI: 5.7816

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59110	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	436	484	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 rWTt +e l ++v +G g+W+tI + Rt ++k++w+ + 59110 436 RWTTAQEEELRRLVGVHGVGSWATILEAGRdmfgADRTSVNLKDKWRVL 484 9**********************98777788899********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.783	429	485	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.08E-9	431	485	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-8	436	486	IPR009057	Homeodomain-like
CDD	cd11660	1.15E-13	436	486	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MHHSQEATDT ALDWCIELIS QSNVLEVGAK YAILDALKDK ISSGEFSPTT RIRMYVESIS 60 RLTASEESGP FMRLRPENVN EVFQSLVKMG DVAHALGDDS IPMPTITLTA QTYAETMLTH 120 LRPPYRDVEN FAESVDNYDL DDEDFQTASP WLDVEALENI RVDLKKQAAR VTDDRCDGIL 180 RRWNTAKDTL VELAKYCGEV LEAMGPSFLE RVAADFRSGR YAPPSHDGVL IPEDAIPEDA 240 RAKRRERELL EAGRVLREAF DKKPNSSSPS DLKNKRKAPA DDVEAAAVRR NVTAFEKLRA 300 ANAAVADPLK EALRASDAAG AQGQGGRRTE EAAWNALAAE YEAGTGSDQP SDESPAAKAA 360 KARAANRDAA DDGKKVVIRP HHRGATARTV DWDSRGDGGA VSDVSTPPTT RKAGAPGVIG 420 ARTTRVGTSG RKAYTRWTTA QEEELRRLVG VHGVGSWATI LEAGRDMFGA DRTSVNLKDK 480 WRVLTKAR*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MHHSQEATDT ALDWCIELIS QSNVLEVGAK YAILDALKDK ISSGEFSPTT RIRMYVESIS  60
RLTASEESGP FMRLRPENVN EVFQSLVKMG DVAHALGDDS IPMPTITLTA QTYAETMLTH  120
LRPPYRDVEN FAESVDNYDL DDEDFQTASP WLDVEALENI RVDLKKQAAR VTDDRCDGIL  180
RRWNTAKDTL VELAKYCGEV LEAMGPSFLE RVAADFRSGR YAPPSHDGVL IPEDAIPEDA  240
RAKRRERELL EAGRVLREAF DKKPNSSSPS DLKNKRKAPA DDVEAAAVRR NVTAFEKLRA  300
ANAAVADPLK EALRASDAAG AQGQGGRRTE EAAWNALAAE YEAGTGSDQP SDESPAAKAA  360
KARAANRDAA DDGKKVVIRP HHRGATARTV DWDSRGDGGA VSDVSTPPTT RKAGAPGVIG  420
ARTTRVGTSG RKAYTRWTTA QEEELRRLVG VHGVGSWATI LEAGRDMFGA DRTSVNLKDK  480
WRVLTKAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	276	KKPNSSSPSDLKNKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001327	0.0	CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002503120.1	0.0	predicted protein
TrEMBL	C1E7R4	0.0	C1E7R4_MICCC; Uncharacterized protein
STRING	XP_002503120.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6506	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.2	3e-07	TRF-like 3

Link Out ? help Back to Top
Phytozome	59110
Entrez Gene	8244407

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]