PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 58153 | ||||||||
Common Name | MICPUN_58153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HSF | ||||||||
Protein Properties | Length: 140aa MW: 15956 Da PI: 9.8719 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.8 | 1.2e-17 | 24 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH...THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX.XXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefakk...vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg.kkell 94 F++kl+++++d++ +++++w ++g+sfv++dee+f+++ vLp n+ F R L YgFkk + ++ eF+h+ F +g ++++l 58153 24 FVSKLHDMVDDPKRRDYVRWAKDGRSFVITDEEKFERNlagVLPGLSFMVNMGNFHRELANYGFKKPDAHK---------LEFEHEGFVRGaDETEL 111 9***********************************96444789988899***************998888.........79******76626789* PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 +++rk++ 58153 112 ARVRRKEN 119 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-21 | 19 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.27E-18 | 20 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-18 | 20 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-18 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-5 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-5 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGADTTIRPN YNIFAFGADK VSPFVSKLHD MVDDPKRRDY VRWAKDGRSF VITDEEKFER 60 NLAGVLPGLS FMVNMGNFHR ELANYGFKKP DAHKLEFEHE GFVRGADETE LARVRRKENY 120 GRYRKDTSTA GKPPAIVRA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001325 | 0.0 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501918.1 | 2e-99 | heat shock transcription factor | ||||
TrEMBL | C1E4T8 | 4e-98 | C1E4T8_MICCC; Heat shock transcription factor | ||||
STRING | XP_002501918.1 | 6e-99 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15382 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 2e-18 | heat shock transcription factor A1E |
Link Out ? help Back to Top | |
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Phytozome | 58153 |
Entrez Gene | 8242806 |
Publications ? help Back to Top | |||
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