PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57895

Common Name

MICPUN_57895

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

HB-other

Protein Properties

Length: 455aa MW: 49617.1 Da PI: 6.7995

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57895	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.1	9.7e-06	421	436	42	57
HHHHHHHHHHHHHHHC CS Homeobox 42 rqVkvWFqNrRakekk 57 +q+k+WF NrR+ +k+ 57895 421 KQIKTWFENRRMTQKR 436 8************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-4	418	436	IPR009057	Homeodomain-like
CDD	cd00086	0.00601	421	436	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MAKTDATRGH AGGGREPLVD SALNPCSRLR QRLPPPPDAS PPRSAFLSEF VAKTAASVLP 60 TEPAANARGA TASKPPRRKV KFSRHVHERE FLVSVYDRNE GRTPERNTCE AIARAFTASP 120 VRNPQGRLTR PRRHTTGSMH INKPMTPQRN NGHGANSTTT APGGSEMSPL NSLLRMKAQH 180 DAAVRGGRDI AETQQRRHPR HHLPGVSLDD FAMLDSESPM FPSCMLDEGA NAVSEVKSAS 240 DDEWEIAKAP EDDCSEMVAD AATERPSQPA STLLAFPQQL ADLFSTEYRT ANDPTAAMVH 300 NLPEFRCWSG NLADVGLLPA KANNQEEEPA AGSDHAEPVH SDDDSGLIIS AEDDDLDVEL 360 YANLTRGSRT GRWIPLDNSG GLGQGIGEIA HVKADSKDDV DMIASATAEL GDGEKHPVQW 420 KQIKTWFENR RMTQKRISEG RDRPPRRPKA KRRD*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MAKTDATRGH AGGGREPLVD SALNPCSRLR QRLPPPPDAS PPRSAFLSEF VAKTAASVLP  60
TEPAANARGA TASKPPRRKV KFSRHVHERE FLVSVYDRNE GRTPERNTCE AIARAFTASP  120
VRNPQGRLTR PRRHTTGSMH INKPMTPQRN NGHGANSTTT APGGSEMSPL NSLLRMKAQH  180
DAAVRGGRDI AETQQRRHPR HHLPGVSLDD FAMLDSESPM FPSCMLDEGA NAVSEVKSAS  240
DDEWEIAKAP EDDCSEMVAD AATERPSQPA STLLAFPQQL ADLFSTEYRT ANDPTAAMVH  300
NLPEFRCWSG NLADVGLLPA KANNQEEEPA AGSDHAEPVH SDDDSGLIIS AEDDDLDVEL  360
YANLTRGSRT GRWIPLDNSG GLGQGIGEIA HVKADSKDDV DMIASATAEL GDGEKHPVQW  420
KQIKTWFENR RMTQKRISEG RDRPPRRPKA KRRD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	445	453	RRPKAKRRD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501783.1	0.0	predicted protein
TrEMBL	C1E437	0.0	C1E437_MICCC; Uncharacterized protein
STRING	XP_002501783.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12959	2	2

Link Out ? help Back to Top
Phytozome	57895
Entrez Gene	8242690

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]