PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57733
Common NameMICPUN_57733
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 446aa    MW: 47215.4 Da    PI: 9.3912
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57733genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13189252155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng......kr.krfslgkfgtaeeAakaaiaarkkleg 55 
            s+++GV+ ++++gr++A+++d  +   +      ++ k+++lg + t+ eAa+a+++a+ k++g
  57733 189 SKFRGVTKHRWTGRFEAHLWDSASarTNpqpggrQKgKQIYLGGYSTESEAARAYDKAAIKYWG 252
            79*******************4445744678877446**********88*************98 PP
2AP252.61.1e-16295347156
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
            s+++GV+++++ grW+A+I  +     +++ +lg+f t+e Aa+a++aa++k++g+
  57733 295 SRFRGVTRHHQHGRWEARIGRVLG---NRYLYLGTFATEELAARAYDAAALKYRGP 347
            789***************988422...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15189261IPR016177DNA-binding domain
PfamPF008476.7E-10189252IPR001471AP2/ERF domain
CDDcd000186.84E-19189262No hitNo description
PROSITE profilePS5103218.518190260IPR001471AP2/ERF domain
SMARTSM003801.5E-26190266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15190260IPR001471AP2/ERF domain
PRINTSPR003671.3E-5191202IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16295354IPR016177DNA-binding domain
CDDcd000183.91E-12295354No hitNo description
PfamPF008473.1E-12295346IPR001471AP2/ERF domain
SMARTSM003805.4E-27296360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17296354IPR001471AP2/ERF domain
PROSITE profilePS5103218.874296354IPR001471AP2/ERF domain
PRINTSPR003671.3E-5336356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDTTPPDGGQ AADSLDPFGW MDWLLDGPFK GGSDQLNLTG SPAGDDGDDF ALPERFEDAE  60
LSIIARSLLL DDAPAPQQSV PSRGTAATAT GPRAGARNAH HPYPSLDFRA TPAQRSASRA  120
LEVFKTDSIL ASMGAAKERN LKRKTAAAHP PIGSLADSVP GRGRPRPSPA KPAPLSNKPP  180
GSVPPGRSSK FRGVTKHRWT GRFEAHLWDS ASARTNPQPG GRQKGKQIYL GGYSTESEAA  240
RAYDKAAIKY WGQHAHLNFP WATYEGEMDE IESMSASALV AQLRRSSSGF ARGASRFRGV  300
TRHHQHGRWE ARIGRVLGNR YLYLGTFATE ELAARAYDAA ALKYRGPRAV TNFERPSGGD  360
GVGEKDASTP PSTEPTEPPP APPARAESGI VVLQSVAVVG LVDDGEGNRP TLQGTAVVAA  420
AAAVEAASPS DSRDSSLGRC WVEAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013250.0CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501319.10.0ant-like protein
TrEMBLC1E3M30.0C1E3M3_MICCC; Ant-like protein
STRINGXP_002501319.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-50AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]