PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57487

Common Name

MICPUN_57487

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

CO-like

Protein Properties

Length: 886aa MW: 94847.5 Da PI: 9.6403

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57487	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	6.9e-06	170	198	3	31
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCll 31 + C+++++ ++ fC ++++ lCe C + 57487 170 SWLCDTCQNGSAKVFCGQDRVVLCEPCDE 198 579****99**************87 PP
2	CCT	54.9	3.1e-19	719	762	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++ l RY eKrk+R F+KkirYesRK++A++R R+KGrF++++ 57487 719 RKEMLIRYHEKRKQRHFKKKIRYESRKVRADNRVRIKGRFARAD 762 89999************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.11	47	82	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.646	47	75	IPR000315	B-box-type zinc finger
CDD	cd00021	4.32E-4	50	76	No hit	No description
SMART	SM00336	0.14	168	203	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.546	168	198	IPR000315	B-box-type zinc finger
CDD	cd00021	2.08E-4	171	198	No hit	No description
Pfam	PF06203	2.4E-15	719	761	IPR010402	CCT domain
PROSITE profile	PS51017	14.733	719	761	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MWRIRHPHNF VCIVLRIRCH PRKLPKRCHE TGKADVTARR VPEERIRMGR VCDYCSTAKA 60 VIFCRADSAR LCLACDKQVR QLPAPITAKP GLTTGRSEWG KSPSTRRTGA RVPVRRDVVN 120 ARSMPLDPSL PTGPFANRRL PFEVFLTRSR HPPSSQVHTA NQVARRHVRS WLCDTCQNGS 180 AKVFCGQDRV VLCEPCDELT RSVNGRLEGK SVPPRAPLKS FSLQDEPVDE HGATYNGSHA 240 TMLSRHPFKE GLALFPASGG SGSKLSGLTG GPHRMGSGSP VLQPGGNAQS GGGMQGLSRQ 300 HSGQRVVGGM APYTIGGEGL AGAHNGGYGT AGVGGAPSWD PFQMVGGITP QQHQYQLQQH 360 RHQSQQRGLL TPFHHQMGGV APPPMPSLVS QGGYFMDENG ISRGSSGERT SAYAWLPGPH 420 LDGLMRNPSH SSNGSDPIGM YMNFDSPEVR LAANGSNSRG SGGSDGLNQG GSNTPPDITG 480 DPRISDASHQ EATSTQHWQQ QQQKQQQKQQ QGHVFSNPAD PMQRYPTPMS AYMPGVDLPY 540 QGRVGPAIPS TSTWSPHHIG GGYMKREASS PNMGLRSNPT SWSTEGSGGL QAQFGQVQPP 600 HGAYLPPHPM PAFMQPQPAF GTYDYSSYPS MMPVAGGVLV RQDRNSQGSA EGSGGGSPPN 660 GGSGGGNIGG GGSVVAMSSM VPGGGFPFDG NPGAGTPGKE DGEDAPETPG SMAPGTALRK 720 EMLIRYHEKR KQRHFKKKIR YESRKVRADN RVRIKGRFAR ADAPLTAIDK SSAKNHKDIK 780 SKLATDDDAE HDAEEKKEEK EQVNLKHELS SEVAAPPPLV TPDVLPGVTA PLPCEYDIFI 840 SGQPLCAGGG PLLFPRAPQI LLRGLQEAII SRLDSSLDPP NDISM*

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MWRIRHPHNF VCIVLRIRCH PRKLPKRCHE TGKADVTARR VPEERIRMGR VCDYCSTAKA  60
VIFCRADSAR LCLACDKQVR QLPAPITAKP GLTTGRSEWG KSPSTRRTGA RVPVRRDVVN  120
ARSMPLDPSL PTGPFANRRL PFEVFLTRSR HPPSSQVHTA NQVARRHVRS WLCDTCQNGS  180
AKVFCGQDRV VLCEPCDELT RSVNGRLEGK SVPPRAPLKS FSLQDEPVDE HGATYNGSHA  240
TMLSRHPFKE GLALFPASGG SGSKLSGLTG GPHRMGSGSP VLQPGGNAQS GGGMQGLSRQ  300
HSGQRVVGGM APYTIGGEGL AGAHNGGYGT AGVGGAPSWD PFQMVGGITP QQHQYQLQQH  360
RHQSQQRGLL TPFHHQMGGV APPPMPSLVS QGGYFMDENG ISRGSSGERT SAYAWLPGPH  420
LDGLMRNPSH SSNGSDPIGM YMNFDSPEVR LAANGSNSRG SGGSDGLNQG GSNTPPDITG  480
DPRISDASHQ EATSTQHWQQ QQQKQQQKQQ QGHVFSNPAD PMQRYPTPMS AYMPGVDLPY  540
QGRVGPAIPS TSTWSPHHIG GGYMKREASS PNMGLRSNPT SWSTEGSGGL QAQFGQVQPP  600
HGAYLPPHPM PAFMQPQPAF GTYDYSSYPS MMPVAGGVLV RQDRNSQGSA EGSGGGSPPN  660
GGSGGGNIGG GGSVVAMSSM VPGGGFPFDG NPGAGTPGKE DGEDAPETPG SMAPGTALRK  720
EMLIRYHEKR KQRHFKKKIR YESRKVRADN RVRIKGRFAR ADAPLTAIDK SSAKNHKDIK  780
SKLATDDDAE HDAEEKKEEK EQVNLKHELS SEVAAPPPLV TPDVLPGVTA PLPCEYDIFI  840
SGQPLCAGGG PLLFPRAPQI LLRGLQEAII SRLDSSLDPP NDISM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501202.1	0.0	predicted protein
TrEMBL	C1E565	0.0	C1E565_MICCC; Uncharacterized protein
STRING	XP_002501202.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7054	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	6e-11	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	57487
Entrez Gene	8242866

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]