PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 57443 | ||||||||
Common Name | MICPUN_57443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HB-other | ||||||||
Protein Properties | Length: 217aa MW: 24159.8 Da PI: 11.1978 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.8 | 3.3e-12 | 31 | 82 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +tk+q ++Le ++e ++ p+ ++ ++LA++lgL+ V+ WF+ rR k+k+ 57443 31 GITKSQEQILEGVYELEPIPDWRTEARLAMQLGLDSLAVTAWFKARRKKQKR 82 589************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.989 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-5 | 26 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-12 | 26 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.47E-6 | 26 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-11 | 26 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-9 | 31 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSLEEKQAAA LRRRRRAFLD EVERIKKRQG GITKSQEQIL EGVYELEPIP DWRTEARLAM 60 QLGLDSLAVT AWFKARRKKQ KRANIRYWYT VIVGVLFVLG LVLYFHELGG LSDMLKKRRL 120 GGPPNKRFFT KSGLPRPYRV KPPGAKRFQA PKDPPKNQKK DAAAGSGGGD SGGKDSAKAK 180 SSSSSSFFGG SATKASTVRY AKPTYEQEAA GRRRNE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001324 | 0.0 | CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002500754.1 | 1e-155 | predicted protein | ||||
TrEMBL | C1E315 | 1e-154 | C1E315_MICCC; Uncharacterized protein | ||||
STRING | XP_002500754.1 | 1e-155 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9294 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | 57443 |
Entrez Gene | 8242370 |
Publications ? help Back to Top | |||
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