PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57430
Common NameMICPUN_57430
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 601aa    MW: 66290.6 Da    PI: 4.7553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047302325123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              ++C+ C k  +rk +L+rH  + +
    57430 302 FVCERCLKYMKRKKTLVRHREKgC 325
              89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541605.13E-1293130IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.4E-2593199No hitNo description
PfamPF117176.7E-9104186IPR025995RNA binding activity-knot of a chromodomain
SuperFamilySSF541605.13E-12160196IPR016197Chromo domain-like
SuperFamilySSF541605.13E-12226269IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.4E-25263313No hitNo description
PROSITE profilePS5172669.459268576IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557291.01E-101271525IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.303.0E-69328483IPR016181Acyl-CoA N-acyltransferase
PfamPF018535.2E-80330519IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00177393452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0004402Molecular Functionhistone acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MEGAEPELEV AAAETPAEDP AVADVDDAAN AVNDEATEQA ADAAPEDAPA TEASPDDEPA  60
PAPQEEEEED RPPEPAEGPD EPAGPAPEPP RAPDAGPRVD YGVGDRVMAL ANFDGGYHAA  120
TVVERQRVDR DRDKSSADGD SPDASGGGGG GGPGGSHAPG TPVRYYVHFE RFPKRCDQWV  180
TPERVRPWTA SDGDFDTAGD GADDPDVGSG LAPDVVEKRP SRAGGLEADR KLTRTRKRRM  240
NEMNHVERAP EDMAPLERLI EEEHEQKTRV KNVEMIEMGR YEIDCWYYSP YPDDFVQNGK  300
LFVCERCLKY MKRKKTLVRH REKGCAMAHP PGDEIYRHPP AVDPGTGAET RPRLSMYEVD  360
GGKAGVYCQN LCLLSKLFLD HKTLYYDVEP FLFYVLCEVD AKGHHVVGYF SKEKYTRESY  420
NLACILTLPP YQRKGYGKFL IQFSYELSKR EGQAGTPERP LSDLGQVSYR RYWSRAILEV  480
IWEHRGKISV ADISKETAIA LDDIVSTLQS HGLVKYYRGN YMVSASSPRH LEEIVVAWCP  540
WVLRDGGKGK GARGDGEARG GDGGLAVDPE YLYWSPDPDR LPIHASRRAR QAATGSPVGW  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1012645331255Histone acetyltransferase KAT8
4dnc_B1e-1012645331255Histone acetyltransferase KAT8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239TRKRRM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500746.10.0histone acetyltransferase
TrEMBLC1E3020.0C1E302_MICCC; Histone acetyltransferase
STRINGXP_002500746.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21322
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]