PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57141
Common NameMICPUN_57141
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HB-other
Protein Properties Length: 373aa    MW: 40681.1 Da    PI: 10.2442
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.5e-07152210154
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 
               rr +t+++++q+e ++e F++++  + +e +eL k l     ++t +q + WF NrR k
     57141 152 RRVKTRLSAQQTEYMQERFAEKPRWKPQECAELLKVLntmgpEVTADQAYRWFDNRRNK 210
               7889*****************************************************98 PP
2Homeobox36.58.2e-12234284656
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++k++ e Le+++ ++  p+ ++r+ +A+ +g+++rqV++WF  r a ++
     57141 234 RISKDEREMLETAYSQDCAPDMHKRAAIAAAIGISTRQVTNWFARRQASQR 284
               6899****************************************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-7140211IPR009057Homeodomain-like
PROSITE profilePS5007111.159149214IPR001356Homeobox domain
SuperFamilySSF466892.2E-7151218IPR009057Homeodomain-like
SMARTSM003890.011151218IPR001356Homeobox domain
PfamPF000466.3E-5152210IPR001356Homeobox domain
CDDcd000864.01E-4152210No hitNo description
PROSITE profilePS5007110.77226286IPR001356Homeobox domain
SMARTSM003892.6E-7227290IPR001356Homeobox domain
CDDcd000860.00661231284No hitNo description
SuperFamilySSF466891.36E-9232292IPR009057Homeodomain-like
PfamPF000462.5E-9234284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-10234287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDSGEPTPAY QLVIGNDHPP EGGLTHGTAQ STSEGVPTKV KGRGWKAKPY CQNTWSTRQD  60
GQRRLEALLN KAANTPDFKP ASLTGDRLSG DAAQLLVDFI QRPVIRQQLQ PLGVGTILGK  120
KRKKKPLLDE DGNPTLTAKK KKPVLISEDT GRRVKTRLSA QQTEYMQERF AEKPRWKPQE  180
CAELLKVLNT MGPEVTADQA YRWFDNRRNK KPTKVSSAMN DSGATTSHIM KTSRISKDER  240
EMLETAYSQD CAPDMHKRAA IAAAIGISTR QVTNWFARRQ ASQRPAMPRS LLANVDHGGG  300
DDIGLLSRGL VEGLLPGAST AGVQGGSQMT LPETLAAQSD LGLGIHHPEL YGNLPTSHSP  360
VPQGVVTRVW GW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123KKRKK
2122141KKKPLLDEDGNPTLTAKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500611.10.0predicted protein
TrEMBLC1E2800.0C1E280_MICCC; Uncharacterized protein
STRINGXP_002500611.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1515922
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]