PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57048

Common Name

MICPUN_57048

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

HB-other

Protein Properties

Length: 397aa MW: 43482.6 Da PI: 11.1795

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57048	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.8	1.6e-07	262	313	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 t++ ++ + +Le++++++ +ps ++ e + ++L+ +++ WF+ rR +k 57048 262 TRLGANNVATLEKVYASDTHPSDDMVESVRRATKLPRSKIVAWFKTRREEDK 313 566678899***************************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.961	255	315	IPR001356	Homeobox domain
SMART	SM00389	0.0019	257	319	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-9	257	322	IPR009057	Homeodomain-like
CDD	cd00086	1.71E-4	261	309	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.0E-8	262	319	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-5	262	313	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MARGGHSHIL KVGKSARQKG RVPSHHSASM RTTASSDFAF GHHSRGSLDT APGRTMMVAL 60 AQQVSALITS RAAPAGPSRA RAPLVARATG PSRFPGAGMS FRNSAAAARR WSEAPKRRSV 120 APRAADDDWE KLFADLKPLA PELSAAQVEV LERALARGRR QVPITDVAKE LELRRDDVLA 180 WVKSNAHRVP ELAKRYPPQP EKVATVRLRE RPDFDRREGR GIRDVDRDDE REYDAQTAYL 240 RNAPGAKHVP KGAPAYKGYV KTRLGANNVA TLEKVYASDT HPSDDMVESV RRATKLPRSK 300 IVAWFKTRRE EDKMAKRRAV RERYGGEEED DGYYDERGGD GFYERRGRGG RGGGGGRRGG 360 RGGGGGLREG GAGDAYGARQ ERGRRDSTGE WSGRRG*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MARGGHSHIL KVGKSARQKG RVPSHHSASM RTTASSDFAF GHHSRGSLDT APGRTMMVAL  60
AQQVSALITS RAAPAGPSRA RAPLVARATG PSRFPGAGMS FRNSAAAARR WSEAPKRRSV  120
APRAADDDWE KLFADLKPLA PELSAAQVEV LERALARGRR QVPITDVAKE LELRRDDVLA  180
WVKSNAHRVP ELAKRYPPQP EKVATVRLRE RPDFDRREGR GIRDVDRDDE REYDAQTAYL  240
RNAPGAKHVP KGAPAYKGYV KTRLGANNVA TLEKVYASDT HPSDDMVESV RRATKLPRSK  300
IVAWFKTRRE EDKMAKRRAV RERYGGEEED DGYYDERGGD GFYERRGRGG RGGGGGRRGG  360
RGGGGGLREG GAGDAYGARQ ERGRRDSTGE WSGRRG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	356	RGGRGGGGGR
2	358	365	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500992.1	0.0	predicted protein
TrEMBL	C1E1Z1	0.0	C1E1Z1_MICCC; Uncharacterized protein
STRING	XP_002500992.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7109	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	3e-07	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	57048
Entrez Gene	8241760

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]