PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56794

Common Name

MICPUN_56794

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

AP2

Protein Properties

Length: 375aa MW: 40107.1 Da PI: 5.4614

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56794	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	25.4	3.5e-08	240	288	2	53
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 gy GV++ +++ rW+A + d + ++ lg+f+ +e Aa+a++aa++kl 56794 240 GYLGVTRPPWTTRWEANLVDeH-----TgGHVFLGNFDQKESAARAHDAAKLKL 288 799************88844.....359*******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.8E-6	240	310	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.261	240	304	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.23E-9	240	288	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.7E-10	241	303	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGGTDGSPGS TTGRHHRDEE ERSWLEMLAA DDDVEGPSLL RAPDVLTRNG ASPDAPVLDD 60 DGLLLRPLGS LGDDDDDFAC GGDVCDLVHR APVHGGIARG VISALRRSAT DVGGELGRRR 120 ADVRAAASPR GVAPRGEARR RPPDRGGGGH TRGQHSPLAG GPGDASLVER LRDSLCPDRA 180 EDLSERRGAR GGLRRARTLP TNLHAHDDDL PLDPRAAQAD VVAARAVEAA AQAASPRPFG 240 YLGVTRPPWT TRWEANLVDE HTGGHVFLGN FDQKESAARA HDAAKLKLAL GDDEPVPQDQ 300 LNFDASDYRE ELSAMTECTF EDFVKTLVTH SYGGSRSAGH SKFRGVFARE DGLWEAKLDA 360 EDAGGAREDR RWKK*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGGTDGSPGS TTGRHHRDEE ERSWLEMLAA DDDVEGPSLL RAPDVLTRNG ASPDAPVLDD  60
DGLLLRPLGS LGDDDDDFAC GGDVCDLVHR APVHGGIARG VISALRRSAT DVGGELGRRR  120
ADVRAAASPR GVAPRGEARR RPPDRGGGGH TRGQHSPLAG GPGDASLVER LRDSLCPDRA  180
EDLSERRGAR GGLRRARTLP TNLHAHDDDL PLDPRAAQAD VVAARAVEAA AQAASPRPFG  240
YLGVTRPPWT TRWEANLVDE HTGGHVFLGN FDQKESAARA HDAAKLKLAL GDDEPVPQDQ  300
LNFDASDYRE ELSAMTECTF EDFVKTLVTH SYGGSRSAGH SKFRGVFARE DGLWEAKLDA  360
EDAGGAREDR RWKK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500875.1	0.0	predicted protein
TrEMBL	C1E198	0.0	C1E198_MICCC; Uncharacterized protein
STRING	XP_002500875.1	0.0	(Micromonas sp. RCC299)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-14	AP2 family protein

Link Out ? help Back to Top
Phytozome	56794
Entrez Gene	8241634

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]