PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56787

Common Name

MICPUN_56787

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

YABBY

Protein Properties

Length: 416aa MW: 46824.6 Da PI: 8.3525

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56787	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	31.4	6e-10	242	332	76	165
YABBY 76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 e ++++ ++e + +++v + ++e+e ee+p + ekr r+P+ +n f++ + ++k+ nP +s ++ f++ a Wa P+ 56787 242 DEMYERMRKTPVEEAEVKEEVIEFGVKEEEVEETPVGTSLKKKKEKRDpRAPTKFNEFMRTKVAQVKSDNPTMSPKDIFAMCAAMWASAPE 332 3344445555555555566666666799999999999999*****77************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.1E-8	255	332	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	276	335	IPR009071	High mobility group box domain
CDD	cd00084	3.07E-4	290	332	No hit	No description
Gene3D	G3DSA:1.10.30.10	5.2E-5	291	335	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MTQLELDIVG DSAAKARLEV SGYFGDPSEQ SVAFRCFLKD MKFTYDGKRR VWDGECTVLR 60 ARRLLAGAKQ EGFYFLTANW DMASAKLHSL FGERLHEVFE EEADDQWPSY DHSCDHVLSC 120 DDDPAAANAI AGGDSDNWTS RYRRVYFVPI VRNKMATDVA GRRSEKTYVS LEAIGRGAFN 180 VKDGLKACKF RWDGEVWHYD RDTDARARKS FRQTARDVRA QFALHHRDGI PVRLTPASDE 240 ADEMYERMRK TPVEEAEVKE EVIEFGVKEE EVEETPVGTS LKKKKEKRDP RAPTKFNEFM 300 RTKVAQVKSD NPTMSPKDIF AMCAAMWASA PENPKNRNMA PPPNRKRAAP AASHAGTMMS 360 EARSRPRVRR EPDAEATSVK REQSPEPSEA TAQFAAGAPN TPGLATRTRR RSSIA*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MTQLELDIVG DSAAKARLEV SGYFGDPSEQ SVAFRCFLKD MKFTYDGKRR VWDGECTVLR  60
ARRLLAGAKQ EGFYFLTANW DMASAKLHSL FGERLHEVFE EEADDQWPSY DHSCDHVLSC  120
DDDPAAANAI AGGDSDNWTS RYRRVYFVPI VRNKMATDVA GRRSEKTYVS LEAIGRGAFN  180
VKDGLKACKF RWDGEVWHYD RDTDARARKS FRQTARDVRA QFALHHRDGI PVRLTPASDE  240
ADEMYERMRK TPVEEAEVKE EVIEFGVKEE EVEETPVGTS LKKKKEKRDP RAPTKFNEFM  300
RTKVAQVKSD NPTMSPKDIF AMCAAMWASA PENPKNRNMA PPPNRKRAAP AASHAGTMMS  360
EARSRPRVRR EPDAEATSVK REQSPEPSEA TAQFAAGAPN TPGLATRTRR RSSIA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500439.1	0.0	YABBY like transcription factor
TrEMBL	C1E191	0.0	C1E191_MICCC; YABBY like transcription factor
STRING	XP_002500439.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9255	4	5

Link Out ? help Back to Top
Phytozome	56787
Entrez Gene	8242061

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]