PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56474
Common NameMICPUN_56474
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 881aa    MW: 89406.8 Da    PI: 5.3184
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56474genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.53.9e-081043432
   GATA  4 CgttkTplWRrgp.....dgnktLCnaCGlyyrk 32
           C   +Tp+WR+g+       + tLCnaCG+ y++
  56474 10 CTRGDTPMWRKGWtrpgeTDPVTLCNACGILYKR 43
           77778********8866666777*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.0E-6543IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:3.30.40.103.4E-74586IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002493.0E-546162IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.103.4E-7145165IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MVLTCANPAC TRGDTPMWRK GWTRPGETDP VTLCNACGIL YKRGWFCVHC EEVYRKVEGA  60
DDDAAGPSGP WIGCDHCERW SHLSCELARA PDAVRGSKSV DDDDDDADDD APPEKGGARS  120
GGLEDSKPSP SPSPPSPAVS PPLPTVFDAE LAPEPYRCPE CRGKDPASLP PPRAVSSHAS  180
QTSVAAGAHV AEGRVVHNRP FLRSGDRRGG GGGGGGGGGG GGGSGCRSAV GADGDAAVGG  240
GGGGAIPKGK RSRGGARKPA VRYDPGAGAG GRLPRRLPKS PATGTAANKR IGRSYALGKR  300
KLPPPPPPPP PPSSSPLVRL YDREPTTFVP VGDSPLLASS SSLFRDGGAL SPTCPSMSLA  360
SLGFVGGGDG DGAAADRWAS RVASVAADAE RRRGYGHGSH IGEPYRVHIP GAHIPIGGGG  420
MGTPSGLSLL RDRDVPMSSP APPVSVSPRD GSIFTVENLT GGGGMRNSHK EFIPPRSSPA  480
SYTSAAATRA FIAARDWADP GAVDPRAPHY RFLEDEEAAA PAPFGGVSPE FGSSSALDNL  540
APPLGTCSDG LHCHPPSTAG MGMPITPALL EPRGGLLGGA AETEPPTWRR GAGSRLNFDG  600
VAGTIATIVG ATIVRDTYGE DDLMEPDDVE VSGVNGERFE DLREAARLLG RRAAMEGLST  660
GSAVLSTSPP DSSGSGGRNE PPVCSPPLPQ DITLHGATGP PPDEACTCDV LAHLSLASSA  720
TRELVRRTKV AGPVAALLHG SASAAVREAA ARLACSPAWR DAIAEEAGRT DDAGGLGLGG  780
SARAVESSVR RGGGTGGGDP GAGSRFFKVA GFDRGLDDGD GDGDDGDDGD DGDWEDGDGD  840
GENKSAPLER TGSVLSASRL EPRPAGSGGI EGRELRNSVM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203223SGDRRGGGGGGGGGGGGGGGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499423.10.0predicted protein
TrEMBLC1DZN70.0C1DZN7_MICCC; Uncharacterized protein
STRINGXP_002499423.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]