PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56348

Common Name

MICPUN_56348

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Nin-like

Protein Properties

Length: 1227aa MW: 130388 Da PI: 6.91

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56348	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.6	2.4e-23	678	725	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 i+l++ls++F++++kdAAk+Lgv+ T+LKriCR++GI+RWP+R +ks 56348 678 GITLSMLSQHFNKHLKDAAKDLGVGSTTLKRICRHFGIARWPRRSLKS 725 69********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.46	657	746	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-20	679	725	IPR003035	RWP-RK domain
SMART	SM00666	1.9E-4	1025	1110	IPR000270	PB1 domain
SuperFamily	SSF54277	2.39E-11	1026	1106	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.0E-12	1027	1094	No hit	No description
CDD	cd05992	8.57E-9	1027	1089	No hit	No description
Pfam	PF00564	6.4E-9	1028	1092	IPR000270	PB1 domain
SuperFamily	SSF54277	6.21E-12	1146	1225	No hit	No description
PROSITE profile	PS51745	13.486	1146	1226	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.2E-13	1146	1224	No hit	No description
SMART	SM00666	0.072	1146	1226	IPR000270	PB1 domain
Pfam	PF00564	6.6E-7	1147	1224	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1227 aa Download sequence Send to blast
MTRAGSSGGD GSAGAESAGQ TQGKRPGSSG NDNAENFDFQ GINDPELSEF LKFLVEGDED 60 GLARPPPGTS ALSEDLSKVW EALENGDDIM GAPIGQTLAA RAAKSGKTFN SEDLHRAAKQ 120 WQSRNQAQNG GKLNVVAMDL AMASNRKDPR NNKNEGAANQ NRTSGGSGGS GGGGSGVGGG 180 SGGSGTRLNS GGSGGKGGGS GGSREGSEFS GAGAGAENDV VGGGDGTSAL DMVKEISSTM 240 QIARAQQVEA GNKNPGAVPD LNVPPEVLIR RIGKLLDTIS TELEYGSLLQ LFVPRINQKS 300 GAISLVTHKD LSRVNTVHEK KFWKYHDASC QFFFNVSPMS PDGLLGLPGR CFLLKRPEWT 360 PSVCCYRPLE YPRLACAIEC QVHSTIAVPI FASDPKETQE MPLAVIEMLM DHQTSSLGQV 420 FEFTSRSLNK HGFYTCGHEC LGTELTMKSA LKDVLPTLCE SNSVALENMC DGLQFPFAQC 480 WVAHKGKLIT AGAPFCVKDK LTMPYRQISK QVSIKEGQGP VGEAFQKGTM IWVDDVQKGS 540 QVEWPLQHTT ALLGLHGACA CKILLKPTHA GQSDGETPQK APIEAVLEVF LPSNLTTAQQ 600 QQKSVESLWN YLQSAAQLRV ANQEQVGQGV VSHNDRAMSV GGDRNGADGA ERGGLYQPSN 660 APGQWNTEEH GPEEPPWGIT LSMLSQHFNK HLKDAAKDLG VGSTTLKRIC RHFGIARWPR 720 RSLKSKQGRL QSALKTLSAE TGGVLSGGGG DQWNQEGSVH GGMFDDGGTS QRGGSGYAGS 780 LMHDDSFLGS GPGSANPSMN GPPGAMGYMG MNGGKPGIRG SSAHGGYPMG GGRGGSMNGA 840 NQFSGMKRAP QDEHHDPWGS QHGATRFRDD ANGNGISMQQ RGNTWHGGQQ QGGYMQYSNQ 900 GQGQGQGQVH FNGGMYNQQQ MHTNQQQGGA NVWNSFEGGF NGGGDQRGGS THNGHMHGGM 960 SAMNALQSQN SLPMQRSDPM QRSDSYQRMD VHMQSSMDAA GASSGGWSSG GQPLGGGGGG 1020 APGPGQVFKL MLKDDMIRMR LLNEVSHRAL IKRVSEVMDI PEHQVRLKYK DDEDDWCVLA 1080 TDQDLKDAYG FMGQTGVDSG KHIKLYMVSP NAPDGKMLHS IRPGILRQEI STMTSAAYAV 1140 NAHAVNFVVK VTMGTDTVRL KLSPGMNTAD LRARLAESFY PSDVGNKLRL KYKDDTEEWC 1200 TLGGDADLDE CRAVNCQTGT IRLHAH*

Sequence ? help Back to Top

Protein Sequence Length: 1227 aa Download sequence Send to blast

MTRAGSSGGD GSAGAESAGQ TQGKRPGSSG NDNAENFDFQ GINDPELSEF LKFLVEGDED  60
GLARPPPGTS ALSEDLSKVW EALENGDDIM GAPIGQTLAA RAAKSGKTFN SEDLHRAAKQ  120
WQSRNQAQNG GKLNVVAMDL AMASNRKDPR NNKNEGAANQ NRTSGGSGGS GGGGSGVGGG  180
SGGSGTRLNS GGSGGKGGGS GGSREGSEFS GAGAGAENDV VGGGDGTSAL DMVKEISSTM  240
QIARAQQVEA GNKNPGAVPD LNVPPEVLIR RIGKLLDTIS TELEYGSLLQ LFVPRINQKS  300
GAISLVTHKD LSRVNTVHEK KFWKYHDASC QFFFNVSPMS PDGLLGLPGR CFLLKRPEWT  360
PSVCCYRPLE YPRLACAIEC QVHSTIAVPI FASDPKETQE MPLAVIEMLM DHQTSSLGQV  420
FEFTSRSLNK HGFYTCGHEC LGTELTMKSA LKDVLPTLCE SNSVALENMC DGLQFPFAQC  480
WVAHKGKLIT AGAPFCVKDK LTMPYRQISK QVSIKEGQGP VGEAFQKGTM IWVDDVQKGS  540
QVEWPLQHTT ALLGLHGACA CKILLKPTHA GQSDGETPQK APIEAVLEVF LPSNLTTAQQ  600
QQKSVESLWN YLQSAAQLRV ANQEQVGQGV VSHNDRAMSV GGDRNGADGA ERGGLYQPSN  660
APGQWNTEEH GPEEPPWGIT LSMLSQHFNK HLKDAAKDLG VGSTTLKRIC RHFGIARWPR  720
RSLKSKQGRL QSALKTLSAE TGGVLSGGGG DQWNQEGSVH GGMFDDGGTS QRGGSGYAGS  780
LMHDDSFLGS GPGSANPSMN GPPGAMGYMG MNGGKPGIRG SSAHGGYPMG GGRGGSMNGA  840
NQFSGMKRAP QDEHHDPWGS QHGATRFRDD ANGNGISMQQ RGNTWHGGQQ QGGYMQYSNQ  900
GQGQGQGQVH FNGGMYNQQQ MHTNQQQGGA NVWNSFEGGF NGGGDQRGGS THNGHMHGGM  960
SAMNALQSQN SLPMQRSDPM QRSDSYQRMD VHMQSSMDAA GASSGGWSSG GQPLGGGGGG  1020
APGPGQVFKL MLKDDMIRMR LLNEVSHRAL IKRVSEVMDI PEHQVRLKYK DDEDDWCVLA  1080
TDQDLKDAYG FMGQTGVDSG KHIKLYMVSP NAPDGKMLHS IRPGILRQEI STMTSAAYAV  1140
NAHAVNFVVK VTMGTDTVRL KLSPGMNTAD LRARLAESFY PSDVGNKLRL KYKDDTEEWC  1200
TLGGDADLDE CRAVNCQTGT IRLHAH*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002499480.1	0.0	nit2-like protein 1
TrEMBL	C1E013	0.0	C1E013_MICCC; Nit2-like protein 1
STRING	XP_002499480.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	5e-42	Nin-like family protein

Link Out ? help Back to Top
Phytozome	56348
Entrez Gene	8241157

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]