PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55695 | ||||||||
Common Name | MICPUN_55695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HSF | ||||||||
Protein Properties | Length: 126aa MW: 14354.3 Da PI: 10.0987 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 62.2 | 1.3e-19 | 21 | 119 | 1 | 102 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 aFl++++ei++d+++++++sws++g++f+v+++ee+ k +Lpk+ ++ faSFv Ln+YgF + +++ + eF ++ F++g+ l++ 55695 21 AFLTRTHEIVSDPRTDHIVSWSKDGKTFIVWKPEELRK-LLPKTLGlfTQPFASFVMELNVYGFVHYGSGNAE----GDYFEFGQDGFQRGRPGLMH 112 69***********************************9.**9964322789*************999998877....789***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i++k++ 55695 113 TIRQKEN 119 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.3E-24 | 18 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.11E-19 | 18 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-22 | 19 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.5E-18 | 22 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-7 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-7 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MASAQRAFTA QAFATLRPVP AFLTRTHEIV SDPRTDHIVS WSKDGKTFIV WKPEELRKLL 60 PKTLGLFTQP FASFVMELNV YGFVHYGSGN AEGDYFEFGQ DGFQRGRPGL MHTIRQKENF 120 GRYRH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001323 | 1e-171 | CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002500299.1 | 5e-90 | heat shock transcription factor | ||||
TrEMBL | C1DZ70 | 1e-88 | C1DZ70_MICCC; Heat shock transcription factor | ||||
STRING | XP_002500299.1 | 2e-89 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-19 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | 55695 |
Entrez Gene | 8240999 |
Publications ? help Back to Top | |||
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