PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55265 | ||||||||
Common Name | MICPUN_55265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | Nin-like | ||||||||
Protein Properties | Length: 164aa MW: 18731.4 Da PI: 8.3742 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 61.9 | 1.1e-19 | 111 | 153 | 8 | 50 |
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 + + +yF+ +i AA +L+ c+T+LKriCR +G++RWP Rk++ 55265 111 DRITSYFHQSIDTAATNLNTCATMLKRICRLHGLHRWPGRKVS 153 5799*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.162 | 95 | 163 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-16 | 111 | 153 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MRATILGGVF ESIRPARKLL DWSEEAPRSW RRQDETATEQ SLHPFTYSCQ CFWAKITRWV 60 VEDSICICAY FFPSEYLVGR LNSRVYSLAT LQVLEEPTLL ASSENKPRGI DRITSYFHQS 120 IDTAATNLNT CATMLKRICR LHGLHRWPGR KVSTSQVTVL DSE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001574 | 0.0 | CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002507626.1 | 1e-119 | mid-like protein type b | ||||
TrEMBL | C1FE17 | 1e-118 | C1FE17_MICCC; Mid-like protein type b | ||||
STRING | XP_002507626.1 | 1e-119 | (Micromonas sp. RCC299) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 1e-10 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 55265 |
Entrez Gene | 8250155 |
Publications ? help Back to Top | |||
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