PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55061
Common NameMICPUN_55061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 621aa    MW: 71289.2 Da    PI: 8.3831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-074785401448
                      HHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  14 davkqlGgg.............................tWktIartmgkgRtlkqcksrwqkyl 48 
                      dav+++ +g                              W++I++++   Rt+ qc++rw ++l
            55061 478 DAVNEHNTGhhhfvssetenisdrstwelqskrtaialPWSKISSHVA-SRTDVQCRERWTNVL 540
                      566777666777777777777777777777777777777*********.***********9975 PP

2Myb_DNA-binding29.81.4e-09550611248
                      SSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqkyl 48 
                      + W++ +d  l+dav+++ +                 W+ +a+++g g+t+k+c++r+  +l
            55061 550 MTWSQRDDADLLDAVEEFTTAssgnmhlnnsraaiiAWSHVAERLGRGLTDKMCRNRYKRLL 611
                      68*****************99*************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9240332IPR001005SANT/Myb domain
PROSITE profilePS500905.111242330IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-8243259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-8302336IPR009057Homeodomain-like
SuperFamilySSF466892.74E-9311366IPR009057Homeodomain-like
PROSITE profilePS500907.549331394IPR017877Myb-like domain
SMARTSM007170.014335396IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10337402IPR009057Homeodomain-like
PfamPF139214.3E-9339410No hitNo description
SuperFamilySSF466894.28E-11381446IPR009057Homeodomain-like
PROSITE profilePS5129413.703395450IPR017930Myb domain
SMARTSM007171.7399448IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11403461IPR009057Homeodomain-like
PROSITE profilePS500908.281447540IPR017877Myb-like domain
SMARTSM007174.5E-7451542IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-8462528IPR009057Homeodomain-like
CDDcd001675.60E-5517540No hitNo description
SuperFamilySSF466891.8E-13520614IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-9529560IPR009057Homeodomain-like
SMARTSM007176.1E-6548613IPR001005SANT/Myb domain
PfamPF002492.6E-8550611IPR001005SANT/Myb domain
CDDcd001670.00357551611No hitNo description
PROSITE profilePS500907.189552611IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-7561612IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MIHQVATESE CERDLFNDDV IQCIDVPELI PNEMSDGREV ERGEENNTRA LTVRQSLPEV  60
SLQFSDTISC ATPSNPKRAI PAWARLQLRE AHFGHVFHDS IYHALRLNQR LQRLLRSTVQ  120
IVDVWLVGIN ASRRDLEADF RDEHRARKQL CITSAEEPFH LNVRDSIEFN LTCEKGRQIE  180
AIYTPPVPGN YFRTTQSCKT GSESTDPTTR LACHVVVPNH DAFLSPWNLF RLLVPYNFRK  240
VNSWSAADDR LLRQGVHYFL QRLRLRSRQR KSLKEFAGMG VMGMTDLLDH SSGVQASWRD  300
AESINWRDLV EVYLPSRQQD DCRLRWANCR DPRLEQVAFT NEEDKILQEL VQKGSDSDWL  360
TIANSLSAPE RGQEKKDFLL RSATQCAGRY QAYLNSKLIR STWEETEDSY LRRFVNRNGA  420
GRWSEAVLTL PGHTHAQALH RWQKVLTPGR RKGTWGTNED IKLRLAVSAY AHVKGLNDAV  480
NEHNTGHHHF VSSETENISD RSTWELQSKR TAIALPWSKI SSHVASRTDV QCRERWTNVL  540
NPNLVRPATM TWSQRDDADL LDAVEEFTTA SSGNMHLNNS RAAIIAWSHV AERLGRGLTD  600
KMCRNRYKRL LRVHKCVQPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-133094604155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-133094604155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015740.0CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507551.10.0MYB transcription factor-like protein
TrEMBLC1FDK80.0C1FDK8_MICCC; MYB transcription factor-like protein
STRINGXP_002507551.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.22e-28myb domain protein 4r1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]