PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55061 | ||||||||
Common Name | MICPUN_55061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 621aa MW: 71289.2 Da PI: 8.3831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 478 | 540 | 14 | 48 |
HHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGgg.............................tWktIartmgkgRtlkqcksrwqkyl 48 dav+++ +g W++I++++ Rt+ qc++rw ++l 55061 478 DAVNEHNTGhhhfvssetenisdrstwelqskrtaialPWSKISSHVA-SRTDVQCRERWTNVL 540 566777666777777777777777777777777777777*********.***********9975 PP | |||||||
2 | Myb_DNA-binding | 29.8 | 1.4e-09 | 550 | 611 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqkyl 48 + W++ +d l+dav+++ + W+ +a+++g g+t+k+c++r+ +l 55061 550 MTWSQRDDADLLDAVEEFTTAssgnmhlnnsraaiiAWSHVAERLGRGLTDKMCRNRYKRLL 611 68*****************99*************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9 | 240 | 332 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.111 | 242 | 330 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 243 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 302 | 336 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.74E-9 | 311 | 366 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.549 | 331 | 394 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.014 | 335 | 396 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 337 | 402 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.3E-9 | 339 | 410 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-11 | 381 | 446 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.703 | 395 | 450 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7 | 399 | 448 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 403 | 461 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.281 | 447 | 540 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-7 | 451 | 542 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 462 | 528 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.60E-5 | 517 | 540 | No hit | No description |
SuperFamily | SSF46689 | 1.8E-13 | 520 | 614 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-9 | 529 | 560 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-6 | 548 | 613 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-8 | 550 | 611 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00357 | 551 | 611 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 552 | 611 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-7 | 561 | 612 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MIHQVATESE CERDLFNDDV IQCIDVPELI PNEMSDGREV ERGEENNTRA LTVRQSLPEV 60 SLQFSDTISC ATPSNPKRAI PAWARLQLRE AHFGHVFHDS IYHALRLNQR LQRLLRSTVQ 120 IVDVWLVGIN ASRRDLEADF RDEHRARKQL CITSAEEPFH LNVRDSIEFN LTCEKGRQIE 180 AIYTPPVPGN YFRTTQSCKT GSESTDPTTR LACHVVVPNH DAFLSPWNLF RLLVPYNFRK 240 VNSWSAADDR LLRQGVHYFL QRLRLRSRQR KSLKEFAGMG VMGMTDLLDH SSGVQASWRD 300 AESINWRDLV EVYLPSRQQD DCRLRWANCR DPRLEQVAFT NEEDKILQEL VQKGSDSDWL 360 TIANSLSAPE RGQEKKDFLL RSATQCAGRY QAYLNSKLIR STWEETEDSY LRRFVNRNGA 420 GRWSEAVLTL PGHTHAQALH RWQKVLTPGR RKGTWGTNED IKLRLAVSAY AHVKGLNDAV 480 NEHNTGHHHF VSSETENISD RSTWELQSKR TAIALPWSKI SSHVASRTDV QCRERWTNVL 540 NPNLVRPATM TWSQRDDADL LDAVEEFTTA SSGNMHLNNS RAAIIAWSHV AERLGRGLTD 600 KMCRNRYKRL LRVHKCVQPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-13 | 309 | 460 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-13 | 309 | 460 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001574 | 0.0 | CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002507551.1 | 0.0 | MYB transcription factor-like protein | ||||
TrEMBL | C1FDK8 | 0.0 | C1FDK8_MICCC; MYB transcription factor-like protein | ||||
STRING | XP_002507551.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4235 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 2e-28 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | 55061 |
Entrez Gene | 8250472 |
Publications ? help Back to Top | |||
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