PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 52223 | ||||||||
Common Name | MICPUN_52223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | SBP | ||||||||
Protein Properties | Length: 526aa MW: 52013.6 Da PI: 8.4144 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 24.1 | 9.3e-08 | 95 | 178 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE....EEEE-TTTSSEEETTT--S......S--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl....eqrfCqqCsrfhelsefDe......ekrsCrrrLakhnerrrkk 76 +C+v+gC++ +s+a+e r + C++h a v ++g + rfC qC +fh l++f +++ C + + err++k 52223 95 VCRVDGCDVVFSTAHE--CRARACQKHCSALFVRLKGArpdeQFRFCYQCHKFHPLDNFRGpdgtllARHNCSQSQVQRLERRKRK 178 6*******99999875..78999**********99975222257***************642223335677766655555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-13 | 89 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.383 | 93 | 178 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-6 | 95 | 151 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-20 | 96 | 177 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00065 | 0.00965 | 100 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSPRRAAAKH AETETVDATP EAMENPAEEV VAEQSASGDP TKAETVDGSA EVAKQGTKRK 60 AEAGARMDDP SPKNEPTGSP EYNREDEMGG SKSRVCRVDG CDVVFSTAHE CRARACQKHC 120 SALFVRLKGA RPDEQFRFCY QCHKFHPLDN FRGPDGTLLA RHNCSQSQVQ RLERRKRKDA 180 LKASKKMAEA LGLNHPAQIE AVNLIGASNV GQLLLANQLV MHERLLAAIG AGGGAAQGLG 240 AAQGLGAAQG LGAAQGLGAA QGLGAAQGLG AAQGLGAAQG LGAAQGLGAA QGLGAAQGLG 300 AAQGLGAAQG LGAAQGSGAA QGLGAAQGLG ALQALIGAQG VGAAGSAQAN ALNQQLGKQQ 360 LPQQLEALAA LRQREQLAML NQAAGVKGLA GTQLSGLGPA VANGGLHGGA GVSAMLDAAV 420 RQEKLNMLSA TMANMVPSPA VGPAAASGLQ GLQGLQGAAA GLQGLQGAAA GLQGLQGAAA 480 GLQGAAAGLL WLQGAAANAP GANLNGDILK SLMGQLGHNG QNQPQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | RRKRKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001324 | 0.0 | CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002500521.1 | 0.0 | predicted protein | ||||
TrEMBL | C1E1Q2 | 0.0 | C1E1Q2_MICCC; Uncharacterized protein | ||||
STRING | XP_002500521.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-06 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | 52223 |
Entrez Gene | 8242140 |
Publications ? help Back to Top | |||
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