PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 51158 | ||||||||
Common Name | MICPUN_51158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | NF-YB | ||||||||
Protein Properties | Length: 151aa MW: 16330.5 Da PI: 4.4298 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.2 | 3.6e-17 | 4 | 95 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + lP + v +++ + lP ++++d ke++ ec efi v+sea++ + +e++ ti ++ ++ al +l f +e++k+ +++ +e ++e 51158 4 EGSLPKSSVYKMISEGLPPGLRMGNDVKEMIVECCNEFIQCVSSEANEISTKENKTTILPEHVVAALESLDFASMIETVKATMNELKEEDKE 95 567999****************************************************************************9999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-33 | 3 | 131 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.58E-29 | 3 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-14 | 6 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDDEGSLPKS SVYKMISEGL PPGLRMGNDV KEMIVECCNE FIQCVSSEAN EISTKENKTT 60 ILPEHVVAAL ESLDFASMIE TVKATMNELK EEDKEVRAEK KKKKGMQISD EEALRLQQEM 120 FAAAKARYNS GDATIGAGQP PAAANTGSLD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-32 | 2 | 125 | 11 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001328 | 0.0 | CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002504124.1 | 1e-107 | predicted protein | ||||
TrEMBL | C1EBH2 | 1e-105 | C1EBH2_MICCC; Uncharacterized protein | ||||
STRING | XP_002504124.1 | 1e-106 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-33 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | 51158 |
Entrez Gene | 8245064 |
Publications ? help Back to Top | |||
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