PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 113469 | ||||||||
Common Name | MICPUN_113469, SDP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB_related | ||||||||
Protein Properties | Length: 520aa MW: 57100.6 Da PI: 8.3462 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 421 | 470 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W eE e lv++v+q Ggg W+ I + +g ++Rt+ ++k++w+++l 113469 421 NPWALEEAEALVEGVAQCGGGKWADIKK-LGfpaiEHRTAVDLKDKWRNLL 470 68***********************966.5557****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.315 | 415 | 474 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-15 | 417 | 494 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-13 | 417 | 471 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-6 | 419 | 472 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-7 | 421 | 470 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.45E-20 | 422 | 471 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MDMAAARLEA SFLAPDLHGA SGEILHNSGD EENERKSLLH QTQAYDQMLM DMETNMHKSS 60 HSSETQCDCG SVEYKQALDL HPPNAPIIRS RGEYPPQNSV HTLKGEFSSF DGGLNFIGED 120 DGDDLLCDFA PNALQEDGSV GLIADDGSLV KPSFSQTSHW NMCQTSPAGH QRTSTLSCAR 180 FAASQQFQGF AKIGYDGVEE PCLSDSWHSK NQPVAQVHPA GPADSSDSSI TALRQRYHKV 240 FGKETSSNNR QWLLRRLAEI NTFGEVDNCE ERKKLHGQDI LVATAKLSRV SAIETSEYVR 300 VTHRLKLTRK EQEKYLKLVE TNTVEHSARQ AKSMWKGTNI HKRGRGDNES HSLGGGLAKT 360 DGSSAGKRIK KGNNSDSDSA GEPPVKSRNN SSAGGNCKAT QARKTLDTNI GGNGRRSKHH 420 NPWALEEAEA LVEGVAQCGG GKWADIKKLG FPAIEHRTAV DLKDKWRNLL RIAMLPHQPV 480 KNAGDKKREI PPELLARVRE LAAKHAKKQT QDGRNRHGR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001574 | 0.0 | CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002507108.1 | 0.0 | myb family transcription factor | ||||
TrEMBL | C1FDC4 | 0.0 | C1FDC4_MICCC; Myb family transcription factor | ||||
STRING | XP_002507108.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1276 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 5e-16 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 113469 |
Entrez Gene | 8250427 |
Publications ? help Back to Top | |||
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