PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

113455

Common Name

MICPUN_113455, MYB119

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB

Protein Properties

Length: 652aa MW: 69298 Da PI: 10.173

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
113455	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.4	1.4e-12	441	485	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W + Edel +v+q+G++ W++Ia+++ ++t kq+ rw++yl 113455 441 SWLPSEDELVRALVAQHGPRKWTLIASRLK-TKTQKQVYARWRDYL 485 699************************9.***********97 PP
2	Myb_DNA-binding	36.7	9.8e-12	492	533	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++W++eE+ +lv++ G+ W+ ar m+ gR+++ +k+r++ 113455 492 KPWSKEEQAKLVELQGHVGNQ-WAVLARLMP-GRSPNAIKNRFH 533 69***************99.*****.********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.833	434	489	IPR017930	Myb domain
SMART	SM00717	1.3E-11	438	487	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.28E-22	438	532	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-12	441	485	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-18	441	493	IPR009057	Homeodomain-like
CDD	cd00167	7.23E-11	441	485	No hit	No description
SMART	SM00717	2.4E-11	490	538	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	12.726	490	540	IPR017930	Myb domain
Pfam	PF00249	5.5E-10	492	533	IPR001005	SANT/Myb domain
CDD	cd00167	1.17E-8	493	536	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-15	494	538	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MRTKESKEPG KVGSKEWKKS KERGISKPEH LIQTKQATGK TEGIQSRGGT VKRVASGGQA 60 PSLGESLKEE LGINPPHIPT VSGGVTHLSD DYLQGLSIDS GGTPNFFHDK SLNDDAHTIS 120 LGAPANRGWG GSLGGMLVAT RSTGSGRSGG SSGGKSPGYF NNNELSELFS IVRGKSSFGE 180 ADDTKRQHTA ETLKPSTSKV APMAAMSLSQ FEQLASLPEH LRALPPIRTK SMDVQNMSEL 240 GGGVNIPGSS GRLFSGLTPH GYMGSGLTPT AVTPGSITGF PGVDHFGMSL TEGHQGGLTP 300 GMPGWASAAQ QTAETTQGGL VIAAGAENNK KRKFATGNGE IRTSKAVKSA AIRNHGSKGE 360 AKKVKGRLKD EQLEDDADDI PLSGLVKISG VGGAAITAAA AAAKLGIPLP GAGDKVSFEE 420 DAYDVDDEGD KLGSTKSRSR SWLPSEDELV RALVAQHGPR KWTLIASRLK TKTQKQVYAR 480 WRDYLQPGLT TKPWSKEEQA KLVELQGHVG NQWAVLARLM PGRSPNAIKN RFHATKRKME 540 RHNKREGSNL GSAEVKHAGK KPKTVAKVKL SSHDGRKLGE EEEEYSKEEQ MAVEGLLLAD 600 TPTSLLAMTE KESISRQFDS ANASIEDRMR EEADKAAKVA EMVVKGQIKR S*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MRTKESKEPG KVGSKEWKKS KERGISKPEH LIQTKQATGK TEGIQSRGGT VKRVASGGQA  60
PSLGESLKEE LGINPPHIPT VSGGVTHLSD DYLQGLSIDS GGTPNFFHDK SLNDDAHTIS  120
LGAPANRGWG GSLGGMLVAT RSTGSGRSGG SSGGKSPGYF NNNELSELFS IVRGKSSFGE  180
ADDTKRQHTA ETLKPSTSKV APMAAMSLSQ FEQLASLPEH LRALPPIRTK SMDVQNMSEL  240
GGGVNIPGSS GRLFSGLTPH GYMGSGLTPT AVTPGSITGF PGVDHFGMSL TEGHQGGLTP  300
GMPGWASAAQ QTAETTQGGL VIAAGAENNK KRKFATGNGE IRTSKAVKSA AIRNHGSKGE  360
AKKVKGRLKD EQLEDDADDI PLSGLVKISG VGGAAITAAA AAAKLGIPLP GAGDKVSFEE  420
DAYDVDDEGD KLGSTKSRSR SWLPSEDELV RALVAQHGPR KWTLIASRLK TKTQKQVYAR  480
WRDYLQPGLT TKPWSKEEQA KLVELQGHVG NQWAVLARLM PGRSPNAIKN RFHATKRKME  540
RHNKREGSNL GSAEVKHAGK KPKTVAKVKL SSHDGRKLGE EEEEYSKEEQ MAVEGLLLAD  600
TPTSLLAMTE KESISRQFDS ANASIEDRMR EEADKAAKVA EMVVKGQIKR S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-20	442	538	7	103	C-Myb DNA-Binding Domain
1msf_C	5e-20	442	538	7	103	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001574	0.0	CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002507084.1	0.0	myb DNA-binding family protein
TrEMBL	C1FD72	0.0	C1FD72_MICCC; Myb DNA-binding family protein
STRING	XP_002507084.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-24	myb domain protein 119

Link Out ? help Back to Top
Phytozome	113455
Entrez Gene	8250400

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]