PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 112717
Common NameMICPUN_112717
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family YABBY
Protein Properties Length: 378aa    MW: 39953.9 Da    PI: 8.875
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
112717genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY55.42.6e-17193243112161
   YABBY 112 vppvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
             + p+ r    r+ r Ps yn fi+eei r+ka+nP ++h++af aaa+nWa
  112717 193 ARPAKRAKKTRKpRDPSPYNVFIREEIPRLKAENPAMTHKDAFKAAARNWA 243
             445556555443499***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-2250243IPR006780YABBY protein
SuperFamilySSF470952.09E-7197246IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-5197245IPR009071High mobility group box domain
CDDcd000848.22E-5204242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGPNLQAASG SNMSDAAAAE ARWARCDAPT DVDAVARGDV DRARDDGSKT VHVDCQRCRS  60
RLEVRVPAAL LAEGSATVRC GACGVHLKIA VPPALAPVHP PRPAFSAMTK PAERLPAASA  120
PRPTQQRPAT GASLQLSAGA LASFLDPAVC VAMGANPTDP QLRKAAEEFW RSCDGDANAV  180
DPNATYDTDL APARPAKRAK KTRKPRDPSP YNVFIREEIP RLKAENPAMT HKDAFKAAAR  240
NWAGSSLNMR SAAYVPDPVL AAAAAAAHAN VLDAHANVTD AATRAAILQK LKPHLLRGRV  300
EDARAEAAAA RRWEMDLTTT NGVDGPTGAK GVVDRYAGDA FASVHEGRDE PTHRGPVRPK  360
TSWSSYRSTH EAFEPID*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499636.10.0yabby-like protein
TrEMBLC1DY700.0C1DY70_MICCC; Yabby-like protein
STRINGXP_002499636.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1555122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-10YABBY family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]