PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 109612 | ||||||||
Common Name | MICPUN_109612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28331.3 Da PI: 10.8789 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.8e-07 | 28 | 80 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT E e lv +v +G g+W+ I + + + R++ ++k++w+++l 109612 28 PWTLPEVEALVTGVGHYGRGQWADIKSLEQdgvaaalESRSAVDLKDKWRNLL 80 8**************************************************96 PP | |||||||
2 | Myb_DNA-binding | 22.5 | 2.7e-07 | 161 | 210 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +WT E + lvd+v+ g +W+ I + g ++Rt+ ++k++w+++l 109612 161 SPWTLTESKALVDGVESCAGCRWTVIKKL-GleslERRTAMDLKDKWRNLL 210 58*********************998665.559999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.145 | 21 | 84 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-12 | 23 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.11E-13 | 24 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 25 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.75E-16 | 27 | 81 | No hit | No description |
Pfam | PF00249 | 1.0E-5 | 28 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.25 | 155 | 214 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 156 | 211 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.027 | 159 | 212 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.92E-13 | 162 | 210 | No hit | No description |
SuperFamily | SSF46689 | 3.52E-14 | 162 | 239 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MYTAASAAAA KRRMLPSRGG GRQKVHRPWT LPEVEALVTG VGHYGRGQWA DIKSLEQDGV 60 AAALESRSAV DLKDKWRNLL RIAMLPVLYK RREATEMPPA LLARVRELAA QKGENAEGRT 120 RGGGGGRESS PGRGMDDDDA TNASEASMPA SKGARRSKHH SPWTLTESKA LVDGVESCAG 180 CRWTVIKKLG LESLERRTAM DLKDKWRNLL QLASLPQQSR RKAETPPELL QRVLWLEAKY 240 GTARRKGRKS ADKESAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2roh_A | 5e-14 | 139 | 248 | 6 | 118 | Telomere binding protein-1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001334 | 0.0 | CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002506645.1 | 0.0 | hypothetical protein MICPUN_109612 | ||||
TrEMBL | C1EIQ7 | 0.0 | C1EIQ7_MICCC; Uncharacterized protein | ||||
STRING | XP_002506645.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1276 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 5e-16 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 109612 |
Entrez Gene | 8249578 |
Publications ? help Back to Top | |||
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