PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 109344 | ||||||||
Common Name | MICPUN_109344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 27699.5 Da PI: 5.2473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 82 | 133 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +++ rE+ RR+ +N++f L ll ++ +a+ K +Ka+i+++A Ik L 109344 82 KNKKSRREKLRREALNDRFMGLSALLDPN-GAGPLKTDKATIVTEAAVVIKRL 133 567899********************887.579999***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-12 | 77 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.38E-10 | 78 | 138 | No hit | No description |
PROSITE profile | PS50888 | 12.1 | 80 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-11 | 82 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-7 | 86 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MAAKPEQKET EMVKDEREDS GDWLADIFDA ADEGVITSLE MSEMSLPQET IAALEAEGSG 60 AACAPGSNEK RGREEGGRES AKNKKSRREK LRREALNDRF MGLSALLDPN GAGPLKTDKA 120 TIVTEAAVVI KRLREELAKL SATLETLQKT NATLEKEKSG LAADKAALQQ DKAKLEHQLH 180 CFMSSMPFAS PPPGAAFAPV PGPFHPPGAA GAVVTQQNGG AVKLAPNQPA GGMMPVMWSL 240 PPLVVHTTTA EEDARLHAPC A* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 86 | 93 | RREKLRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001331 | 0.0 | CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002505435.1 | 0.0 | predicted protein | ||||
TrEMBL | C1EG09 | 0.0 | C1EG09_MICCC; Uncharacterized protein | ||||
STRING | XP_002505435.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5460 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-14 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 109344 |
Entrez Gene | 8248614 |
Publications ? help Back to Top | |||
---|---|---|---|
|