PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 108997
Common NameMICPUN_108997
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HSF
Protein Properties Length: 437aa    MW: 47083.6 Da    PI: 5.3329
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
108997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.32e-27291192101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++++++d++ +++isws++g++f v++++ ++++ Lp +FkhsnfaSFvRQLn YgF+k ++++          eF  + F++gk ell++++
        108997  29 FLWKTWNLVSDPSSDHIISWSAQGRTFTVWQPDLLESTQLPATFKHSNFASFVRQLNNYGFRKCHSDR---------FEFGVEGFEQGKPELLTTLR 116
                   99***************************************************************999.........67***************999 PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+ 
        108997 117 RHD 119
                   975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3023112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-2625117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-3825118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2429117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-152952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-156779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-158092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTSAKGASAQ PGSATGASTP FATVNVSPFL WKTWNLVSDP SSDHIISWSA QGRTFTVWQP  60
DLLESTQLPA TFKHSNFASF VRQLNNYGFR KCHSDRFEFG VEGFEQGKPE LLTTLRRHDA  120
PRNKKKEADG GKSASAASSG KKGAGVKSGG LKTAPHVPGS GYDGLELGAY GGITSEVEQL  180
KRDRLLLLKE VMRLREVQSH TQDQVRELSA RLASTEQFQS RMMSFVDAVQ SGTGLSFDAQ  240
GMQKFKEVAA TRKRRQMFLP SSAAAPDQSA PGQNLNLQGS LGSGSYNATQ GFSLQEMDDD  300
DILPADPLAP DPDDALTSQM FGPLSPNPTA PIQLPEHEWL DMLGGGGVDP TVGKLEPRVG  360
GPLIRSASQD DDVGAEGSAD PFVSSILDRG PSLEKQMSLG FLERMSSAEI GDMVKDMNIN  420
QPFDDEFARR VREIKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-182511725128Heat shock factor protein 1
5d5v_B6e-182511725128Heat shock factor protein 1
5d5v_D6e-182511725128Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255TRKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508423.10.0heat shock transcription factor
TrEMBLC1FI900.0C1FI90_MICCC; Heat shock transcription factor
STRINGXP_002508423.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-39heat shock transcription factor A2
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]