PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 108680 | ||||||||
Common Name | MICPUN_108680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | SBP | ||||||||
Protein Properties | Length: 389aa MW: 41157.8 Da PI: 8.342 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 49.9 | 8.4e-16 | 173 | 247 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v++C + + y rr++ C+ h a +v+ +g rfCq+Cs f +s+fD ++++Cr+ L +n+ rr+++ 108680 173 RCTVDNCGEPCVS--VYCRRYHTCREHIGALHVVRNGADVRFCQRCSSFQPISDFDGDRHTCRDALRAYNSARREAR 247 69*****998755..6*******************************************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-15 | 169 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 16.477 | 171 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.72E-15 | 172 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-20 | 174 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MLTHPNNTGA AGAQAKPPRR ARANAKDGEG IVPSVGKAGF QLKAVGTRPI RMSHVSSTSH 60 HSLASLAHAK EEDHAEDDNE ELSPEREQPD ASLGTVVADA SHPDTRETTE TPNLEPNDSD 120 ASRPVPAGES QRGGNQLIRM SPRAEEPDAA LEVHASHRAP PELPPSSPGG TIRCTVDNCG 180 EPCVSVYCRR YHTCREHIGA LHVVRNGADV RFCQRCSSFQ PISDFDGDRH TCRDALRAYN 240 SARREARKTN KYKRKEAAAA AGDADGALKR GAKGAKKTRT EPAPSSKNAN DAPANAAFGV 300 DNRAIEIYRA TMNALQATRA APAPGAPPPP AATMTQLDAM RMMAASAGNQ AAALTGNGGD 360 GGAQMLRMMQ FMNAAWLQWC ANVKSQGP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00060 | PBM | Transfer from AT3G60030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001328 | 0.0 | CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002504061.1 | 0.0 | predicted protein | ||||
TrEMBL | C1EB45 | 0.0 | C1EB45_MICCC; Uncharacterized protein | ||||
STRING | XP_002504061.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 2e-11 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | 108680 |
Entrez Gene | 8245000 |
Publications ? help Back to Top | |||
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