PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 108283 | ||||||||
Common Name | MICPUN_108283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | YABBY | ||||||||
Protein Properties | Length: 130aa MW: 13554.9 Da PI: 10.8726 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.1 | 5.5e-08 | 48 | 100 | 114 | 165 |
YABBY 114 pvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 p+ + ekr r+P+ +n f++ + ++k+ nP s ++ f++ a Wa P+ 108283 48 PIKKKKEKRApRAPTKFNEFMRTKVAQVKSDNPTKSPKDIFAMCAAMWATAPE 100 67788899966**************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 6.02E-9 | 47 | 103 | IPR009071 | High mobility group box domain |
Pfam | PF04690 | 1.3E-6 | 47 | 100 | IPR006780 | YABBY protein |
Gene3D | G3DSA:1.10.30.10 | 5.1E-5 | 58 | 103 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.31E-4 | 58 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MEMSKLAPAF AKLAEAAQEI SEIFAAAGGV TLGKRGPGAL LLDADGKPIK KKKEKRAPRA 60 PTKFNEFMRT KVAQVKSDNP TKSPKDIFAM CAAMWATAPE NPKSSAAAAL PPAKSEKGSL 120 KSGKGKSKK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001326 | 0.0 | CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002502162.1 | 3e-85 | predicted protein | ||||
TrEMBL | C1E6G0 | 6e-84 | C1E6G0_MICCC; Uncharacterized protein | ||||
STRING | XP_002502162.1 | 1e-84 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9255 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | 108283 |
Entrez Gene | 8243449 |
Publications ? help Back to Top | |||
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