PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 108103 | ||||||||
Common Name | MICPUN_108103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 217aa MW: 23329.3 Da PI: 4.5013 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.4e-07 | 3 | 45 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+ + +++ l C +++ +C +C +++H+ H++v 108103 3 TFCEVCTTNPAALVCCSDDAVMCGSCDESIHSAnpvvrkHERV 45 67*****************************667888888876 PP | |||||||
2 | zf-B_box | 22 | 3.4e-07 | 52 | 89 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 e+++C+ ++ +++ C++++ +lC++C ++H+ H 108103 52 EKPNCDICQVNPVYVVCHEDRAFLCRSCDISIHSAndH 89 789******************************65664 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.556 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.74E-6 | 3 | 40 | No hit | No description |
Pfam | PF00643 | 1.8E-6 | 3 | 45 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.072 | 51 | 98 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.7E-11 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-6 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.54E-7 | 56 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MKTFCEVCTT NPAALVCCSD DAVMCGSCDE SIHSANPVVR KHERVAFKST SEKPNCDICQ 60 VNPVYVVCHE DRAFLCRSCD ISIHSANDHV AKHQRFLMTG ITVELDAVGA TAKEGEVAET 120 PVVTQPPMAK KAKGTKRKIE QQFQAPSANS EDGLVPSMGG AEAAADPMAS EEEFNSFVQD 180 FLGNTKEGKD VNMSDFLDNF FDDIPAGNDF GVVPVM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001325 | 0.0 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501766.1 | 1e-160 | predicted protein | ||||
Swissprot | Q9SYM2 | 2e-32 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | C1E401 | 1e-158 | C1E401_MICCC; Uncharacterized protein | ||||
STRING | XP_002501766.1 | 1e-159 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5824 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 7e-35 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 108103 |
Entrez Gene | 8242671 |
Publications ? help Back to Top | |||
---|---|---|---|
|