PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

107954

Common Name

MICPUN_107954

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

SBP

Protein Properties

Length: 470aa MW: 48501 Da PI: 5.6249

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
107954	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	31.8	3.6e-10	125	200	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C + ++ r C h + + + g+ r Cq C fh +s fD + ++C +rL + r r k 107954 125 CCQVDDCLNPRKQPTANSRMPLTCAEHNGMLSLTYGGEASRECQACRAFHPVSAFDRDNKTCETRLLRKKLRYRAK 200 6****9999999999999999*****************************************9998887755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-12	123	187	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	13.477	123	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.63E-10	125	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-18	126	199	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MRDENDIGAQ EPEEQDENPP ASPRSEPAAN AFGPGGFQED APEEGEKRVP IGDASADAAG 60 SPVEPAKEPE GNTVDQEQSA GAQPVVAANS ADASDPSDAA APDNTLRTAQ HAILLRQQAI 120 KYKGCCQVDD CLNPRKQPTA NSRMPLTCAE HNGMLSLTYG GEASRECQAC RAFHPVSAFD 180 RDNKTCETRL LRKKLRYRAK TLQQRDEHRG QVGKQKARRH EAALQAVAAA TAQPGVGVGL 240 GQFSHLQGPA GFMLPFGGKF LGVAHKDGGA DALAAARESI ASVNPYGMFP GLTHMPFGQG 300 AVEGSAAAAA SAFAASFGTG LGGDDNKIAI PQPGGINLQS LAGFPTRSNP AELAESSPAA 360 AQAYLAALVQ GNTGLSALAL QGAGLTGGIP GLAGLQNPDV LANLARQNNL QEQVAALRAN 420 HMLRIAQAAE MQASVAMANS RSTGGDILNR QNLYPHLASD PAQAGCSIM*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MRDENDIGAQ EPEEQDENPP ASPRSEPAAN AFGPGGFQED APEEGEKRVP IGDASADAAG  60
SPVEPAKEPE GNTVDQEQSA GAQPVVAANS ADASDPSDAA APDNTLRTAQ HAILLRQQAI  120
KYKGCCQVDD CLNPRKQPTA NSRMPLTCAE HNGMLSLTYG GEASRECQAC RAFHPVSAFD  180
RDNKTCETRL LRKKLRYRAK TLQQRDEHRG QVGKQKARRH EAALQAVAAA TAQPGVGVGL  240
GQFSHLQGPA GFMLPFGGKF LGVAHKDGGA DALAAARESI ASVNPYGMFP GLTHMPFGQG  300
AVEGSAAAAA SAFAASFGTG LGGDDNKIAI PQPGGINLQS LAGFPTRSNP AELAESSPAA  360
AQAYLAALVQ GNTGLSALAL QGAGLTGGIP GLAGLQNPDV LANLARQNNL QEQVAALRAN  420
HMLRIAQAAE MQASVAMANS RSTGGDILNR QNLYPHLASD PAQAGCSIM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	197	RKKLRYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500625.1	0.0	predicted protein
TrEMBL	C1E2A6	0.0	C1E2A6_MICCC; Uncharacterized protein
STRING	XP_002500625.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10694	2	4

Link Out ? help Back to Top
Phytozome	107954
Entrez Gene	8242240

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]