PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 106326 | ||||||||
Common Name | MICPUN_106326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | G2-like | ||||||||
Protein Properties | Length: 307aa MW: 31527.3 Da PI: 6.7589 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.2 | 2.2e-29 | 59 | 112 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH rF++av++L G+++A+Pktil+lm+v+g+t+e+v+SHLQkYRl 106326 59 KPRLVWTPELHMRFMNAVNHL-GIKNAVPKTILQLMNVEGMTRENVASHLQKYRL 112 79*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.866 | 56 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-20 | 56 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-30 | 57 | 116 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 59 | 112 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-7 | 62 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSDRSNEESG SPEIAPRDDD DTERHKTNGD ATTAGGDDDV HGGGHHHGGG GGGGKQPKKP 60 RLVWTPELHM RFMNAVNHLG IKNAVPKTIL QLMNVEGMTR ENVASHLQKY RLYLKRLAGV 120 PPSTPLPADI MQRVHPFQYP GTATAAGAAA MHAAGGMPSA TWAPTIEQMH AGVPPGMPTG 180 FPDFQNLPPG HAGPPSADAF KDAEAFHAQM AATAQFMSYM GAAGAAAGGF GPPPGAVGNA 240 GAPGGSEEAA MNAAAMMRQG YSAGYPAMPY GSPPMPAGFM PPPWMVPGAP SPGSGSFHDD 300 PSSRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-30 | 59 | 115 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001577 | 0.0 | CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002509350.1 | 0.0 | g2-like myb-family transcription factor | ||||
TrEMBL | C1FJJ1 | 0.0 | C1FJJ1_MICCC; G2-like myb-family transcription factor | ||||
STRING | XP_002509350.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 3e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 106326 |
Entrez Gene | 8247984 |
Publications ? help Back to Top | |||
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