PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

105954

Common Name

MICPUN_105954

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

SBP

Protein Properties

Length: 345aa MW: 37145.5 Da PI: 8.5801

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105954	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	28.1	5.6e-09	77	159	1	75
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE....EEEE-TTTSSEEETTT--SS......--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl....eqrfCqqCsrfhelsefDee......krsCrrrLakhnerrrk 75 +Cqv gC+ + s+++ r + C++h a +v ++g+ + rfC qC +fhel+ f + ++ C + a +rr+k 105954 77 ICQVVGCDIEYSSTH--ECRARACQTHCSALSVRLEGQdpeqQFRFCYQCHKFHELDAFRNPdgtlrpRHNCYQSQALRLDRRKK 159 5****99988876..57999********9985332256*************76511111234455555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-13	74	136	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	11.007	75	154	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-7	77	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-20	78	160	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVFPGDSGKH DWPIMSYGEQ FLWLQEGSGT ADGASKRDRS AGGSNVERGE KRAAEPSQAQ 60 GAPRKKATPG PRVKNRICQV VGCDIEYSST HECRARACQT HCSALSVRLE GQDPEQQFRF 120 CYQCHKFHEL DAFRNPDGTL RPRHNCYQSQ ALRLDRRKKK DAAAKASKKN LDIVAVLEAQ 180 SGQIIDAVNL ARASNAAASN LILANVMEVA KATQQTIANV QQRPGSHPSQ QLPHTTKPAA 240 AATAFAPAVS SFNPGFSASS SGAERRVPGD HPSGPSLGNP ASPLDITAID DKRHQRTMHV 300 MGDAAGATRF EELAHVPPEE TLQGRDGGEF SPDLLHSLLS YPKP*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVFPGDSGKH DWPIMSYGEQ FLWLQEGSGT ADGASKRDRS AGGSNVERGE KRAAEPSQAQ  60
GAPRKKATPG PRVKNRICQV VGCDIEYSST HECRARACQT HCSALSVRLE GQDPEQQFRF  120
CYQCHKFHEL DAFRNPDGTL RPRHNCYQSQ ALRLDRRKKK DAAAKASKKN LDIVAVLEAQ  180
SGQIIDAVNL ARASNAAASN LILANVMEVA KATQQTIANV QQRPGSHPSQ QLPHTTKPAA  240
AATAFAPAVS SFNPGFSASS SGAERRVPGD HPSGPSLGNP ASPLDITAID DKRHQRTMHV  300
MGDAAGATRF EELAHVPPEE TLQGRDGGEF SPDLLHSLLS YPKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RRKKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001575	0.0	CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002507948.1	0.0	predicted protein
TrEMBL	C1FG73	0.0	C1FG73_MICCC; Uncharacterized protein
STRING	XP_002507948.1	0.0	(Micromonas sp. RCC299)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-06	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	105954
Entrez Gene	8245873

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]