PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 105904 | ||||||||
Common Name | MICPUN_105904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HSF | ||||||||
Protein Properties | Length: 300aa MW: 31980.5 Da PI: 7.8997 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.9 | 2.7e-32 | 12 | 104 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++++e+++++sws ng++f v++ ++f++k+Lp+ F h nf+SFvRQLn YgF+kv++++ w F+++ F +g +++l+ki 105904 12 FLRKVYSIVSNPETDDIVSWSGNGKQFTVHQLNDFSTKILPSNFNHPNFSSFVRQLNSYGFRKVEHSS---------WTFANPDFYEGGEDNLKKIS 99 9****************************************************************998.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rk+s+ 105904 100 RKTSQ 104 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.1E-38 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.2E-30 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.03E-27 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.4E-27 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-16 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-16 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-16 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGVRGVEIAA PFLRKVYSIV SNPETDDIVS WSGNGKQFTV HQLNDFSTKI LPSNFNHPNF 60 SSFVRQLNSY GFRKVEHSSW TFANPDFYEG GEDNLKKISR KTSQKKQEEI RRGAWDDESA 120 FGVGGDPRRT ALDLHMRQEL QICRLEVAHL VHRIGTVEHI QEQLLALLIN PQNSAQRAAS 180 SGMQQQGGGA NAGQIGDVLE SLYKQISESR HSGDATNLGG WGAYGVNAAV ARHPGLAGAA 240 AMGGLGPQAR HDLGGGVNGG LQFGYDALSG LGVTGAGTGG VSNGAGRSQL EALYHQATK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 5e-20 | 9 | 101 | 1 | 104 | Putative transcription factor |
5d5x_B | 5e-20 | 9 | 101 | 1 | 104 | Putative transcription factor |
5d5x_E | 5e-20 | 9 | 101 | 1 | 104 | Putative transcription factor |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001575 | 0.0 | CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002508079.1 | 0.0 | heat shock transcription factor | ||||
TrEMBL | C1FFA6 | 0.0 | C1FFA6_MICCC; Heat shock transcription factor | ||||
STRING | XP_002508079.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-28 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | 105904 |
Entrez Gene | 8245429 |
Publications ? help Back to Top | |||
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