PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105509
Common NameMICPUN_105509
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 321aa    MW: 34055.9 Da    PI: 9.9682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105509genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14949345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      W++eEd  l+++ + +G++ W+++a++++ g+t+ qc  rw+
           105509  9 VWSPEEDAELARLQEIHGNR-WALVAAELP-GKTGQQCAQRWR 49
                     7*******************.*********.***********8 PP
2Myb_DNA-binding53.84.6e-1758103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + +WT+eEd +l+++ +q+G + W+ Iar++  gRt+ qc  rw+ +l
           105509  58 KEKWTPEEDAQLAKLYEQHGQR-WAEIARHLE-GRTDQQCMGRWRRHL 103
                      679******************9.*********.************986 PP
3Myb_DNA-binding42.12e-13109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT  Ed++l  ++  lG++ W+ I++++  gRt+ qc+ rw++
           105509 109 KDAWTDPEDKKLMSLHDSLGPR-WSNISKMLT-GRTAQQCRARWFQ 152
                      679*****************99.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.204152IPR017930Myb domain
SMARTSM007175.8E-14654IPR001005SANT/Myb domain
PfamPF002496.0E-14949IPR001005SANT/Myb domain
CDDcd001671.36E-111049No hitNo description
Gene3DG3DSA:1.10.10.601.1E-181061IPR009057Homeodomain-like
SuperFamilySSF466894.23E-2632108IPR009057Homeodomain-like
PROSITE profilePS5129426.96553107IPR017930Myb domain
SMARTSM007172.7E-1757105IPR001005SANT/Myb domain
CDDcd001671.11E-1360103No hitNo description
PfamPF139211.6E-1961120No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2462111IPR009057Homeodomain-like
SuperFamilySSF466891.08E-2286153IPR009057Homeodomain-like
PROSITE profilePS5129415.288108158IPR017930Myb domain
SMARTSM007173.8E-11108156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-17112147IPR009057Homeodomain-like
Gene3DG3DSA:2.30.27.107.4E-4148204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSDGKSSSVW SPEEDAELAR LQEIHGNRWA LVAAELPGKT GQQCAQRWRH KVNPAIKKEK  60
WTPEEDAQLA KLYEQHGQRW AEIARHLEGR TDQQCMGRWR RHLDPSVKKD AWTDPEDKKL  120
MSLHDSLGPR WSNISKMLTG RTAQQCRARW FQLSAADDDA LSEGTTVSAA AAGSEGGGGK  180
SSGGSSGGKK RPKTALKTSN LGRTPTPPLS PSTPAVTDEV DGAVASGRGD SNRGTVSNKK  240
RGVGSVLGAP VAKRRRSAME KGGNKGGVQL ENDTSSSGSG YGNGGGLDLL AMLYSAAVTY  300
ETSVVAAGAG MKSFPPELYA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-35101516151MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-35101516151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KKRGVGSVLGAPVAKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013250.0CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501547.10.0predicted protein
TrEMBLC1E5040.0C1E504_MICCC; Uncharacterized protein
STRINGXP_002501547.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-32myb domain protein 3r-5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]