PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105273
Common NameMICPUN_105273
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 356aa    MW: 39872.3 Da    PI: 10.7418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105273genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.9e-11252299348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      +WT eE el +++v+++G g W++I +++     Rt  ++k+rw++ l
           105273 252 KWTREESELVAEGVAKYGYGEWAAIQKELFaeSARTSTDIKDRWRNML 299
                      8*******************************99***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0035401122IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
SMARTSM003841.21426IPR017956AT hook, DNA-binding motif
PRINTSPR009291.4E-51424IPR017956AT hook, DNA-binding motif
PROSITE patternPS0035403445IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
PRINTSPR009291.4E-53546IPR017956AT hook, DNA-binding motif
SMARTSM003840.623749IPR017956AT hook, DNA-binding motif
SuperFamilySSF542362.3E-7104185IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.9E-7106184No hitNo description
CDDcd017691.90E-4120183No hitNo description
PROSITE profilePS5129413.37245303IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-14246292IPR009057Homeodomain-like
SMARTSM007172.5E-9249301IPR001005SANT/Myb domain
PfamPF002492.7E-10251299IPR001005SANT/Myb domain
CDDcd116605.58E-19251300No hitNo description
SuperFamilySSF466897.03E-16252327IPR009057Homeodomain-like
Gene3DG3DSA:1.20.1260.103.5E-4293339IPR012347Ferritin-related
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MHPPPEGLSQ APAKRGRGRP RKDAPKPIPA PKEAPAKRGR GRPRKDAPAT EKTAPEKKPA  60
KPNAAVKRRA PPAVKEVGQH SDDESLDELI AAEKAKERAP PPPPEPAVEN WTISMATPMG  120
TLPVEVTSLV TVTDIKQLVT AKTGGRLPPD RQIIKLNERL IDDFGPNATL ANHGLKHRSM  180
LTLTFIRNAK SPAKSPTVDR TREHSRALQT VPSPPREERP AKERRTGWQP ESVTRRVGPR  240
ERDQSAQGTK HKWTREESEL VAEGVAKYGY GEWAAIQKEL FAESARTSTD IKDRWRNMLK  300
AASKPNDFKF RSFMDDDLRE QINEAQNKAD EYQQKKLMEV ERQRQEMIRV RGQIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644KRGRGRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500946.10.0predicted protein
TrEMBLC1E1P60.0C1E1P6_MICCC; Uncharacterized protein
STRINGXP_002500946.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP736355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-11TRF-like 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]