PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104880
Common NameMICPUN_104880
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 1779aa    MW: 195915 Da    PI: 4.825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104880genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.47.3e-12416452135
    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C+nCg++   T  +R gp+g ktLCnaCGly++ +g+
  104880 416 CHNCGVKReqTQKMRFGPSGAKTLCNACGLYWATQGR 452
             *******999**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-11410463IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-8412463No hitNo description
Gene3DG3DSA:3.30.50.102.5E-12414464IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.29E-12415455No hitNo description
PfamPF003201.7E-9416452IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.671439466IPR000679Zinc finger, GATA-type
SuperFamilySSF637639.77E-5886949IPR010919SAND domain-like
PfamPF013427.5E-6889949IPR000770SAND domain
Gene3DG3DSA:3.10.390.103.0E-4890949IPR010919SAND domain-like
SuperFamilySSF473701.7E-2110951229IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.7E-2111041224IPR001487Bromodomain
SMARTSM002971.0E-1111051227IPR001487Bromodomain
CDDcd043692.46E-2011081222No hitNo description
PROSITE profilePS5001415.41111351208IPR001487Bromodomain
PfamPF004393.6E-911391211IPR001487Bromodomain
PRINTSPR005037.6E-611521168IPR001487Bromodomain
PRINTSPR005037.6E-611891208IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.8E-2714691602IPR001487Bromodomain
SuperFamilySSF473701.23E-2514711601IPR001487Bromodomain
SMARTSM002971.3E-2614861597IPR001487Bromodomain
PfamPF004392.1E-1215011582IPR001487Bromodomain
PROSITE profilePS5001416.15615071578IPR001487Bromodomain
PROSITE patternPS00633015121570IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1779 aa     Download sequence    Send to blast
MPRSSHSRHA QLSRQFERRV GARSGHARAK VATREIASRP PLGEAGLADN SALPMDPAKE  60
PSMPGDGDAA TADDKENGAS MGPAGAKSTA MDTAGAQSAG AEGGAPAADG DAPQAEDGDD  120
EEDEESEEES EEEEDDGMTE YERQRQRNIQ RNRELMMQLS LKKMADNIKP DEEENAAKKR  180
GPKKGWKKNR GPVAPSRGSS RIQRLQEERK HTAWKDLRVD KPLKTHPNCY VELAPQCLGI  240
ADNERRVDGS DGIMIPGGYF AEGEFMSETL YCWTDMLGKH FVAWGEAEGD RQRHVETEDG  300
GSDTAAGAAL CILRELQRRK LELFGAIPGR GVSEPTNIRM RIDDLPTLYR EPEKMPAVLK  360
PLLEAASRPV LPPKRKPGRP PKEKKEKLAK TPKTPKTSKS VYGAAKFADV PDAPECHNCG  420
VKREQTQKMR FGPSGAKTLC NACGLYWATQ GRNRPNGVFK DDYERKVPEG QVPAVAYTRG  480
FRPDTISRAY NTVAVGNLDE KKSPIDSAEK KEPEEGTVVA MPDSAEKKEE DGEDVADVVD  540
DDDDDDDEPL MDIARKVDED EEDDDEDVDD EEEEEAGAEQ QTEPTAASTP AKDLGRGSFF  600
QNMVKMASVG IVTPAMIGAD DFPAILPVGF PAPRWAPHLT HPLPPLLGMT EDSAYEVKTD  660
PQNSKLAKAI AVIAESDPIK DAQGDKLKDY PDFAWYAVRT CAAALSGWGA TVAGVGPTGP  720
CVFPTRFTPT SMAPTPRVYV ERDVDGLTLF GYAEPEVQQA LEGQMEKYEQ KAEVEGPESE  780
EAERKVDLNE ALAFLDTHVK RAMKVLQNAD NRADRDAKYE RAAPRVAMAS EAKILCPPLP  840
NADKSKKTKG KGGAGVSGAS AGDDSEQAGF LTEEAVRALP GQEEVPEPIS VVCGTATEGV  900
LLPYCRPREE KIQINDSEET IVTPAVYERM GGMGASKKWR KSIRLANNTD KHLGNHLAEL  960
GAVKGESVVG RRIAIYWVDD KSFYLGVVDS FTPQTGEHGI KYDDGEIEDL FLPMQRIKWL  1020
SQDVGPAGFG QLKGDAPAAA EKTQEQLAHE SIMAAAKAKE EEAAAAEARR IEEEAKGILS  1080
PEGRNRMTLG AFDVWVNRPL QWRMKNSERR KCFEILQILR SVPDPDDDPD DEDEPPRLLI  1140
EPFDTLPTPR ELPDYYEIIR CPMDCRCIER VLKRPAERSF ASPWMFAVAV ELMLTNAQIY  1200
NDEDSQIHEE AGIIRRAFVK AMEERFPNQP LPRPFKIYET VDEPMWMRPW GWTAPQPEDV  1260
ADEADPFGPL DWEQEAKDED EERALARAMK AGAAMYGGAP VVIAKPKGRP PGRPRKEDPG  1320
AYARDDTNYD PKSRHGVSAA SRGNKRKQTD LNLGPAATAA KDALDEAAEA LTLDELVEAA  1380
ESAKAPELAG ARRPGSTMLS ILRQHPDIFV ESLTGNGAVF SINERLVEYS DDDEPAGPAR  1440
KPTTRAKPKK SYADPDEDDF DDHDAASPDH HGGKRKREEP HYDGLSPQQT EACKNILKKV  1500
KELKDRDGRQ VAELFILLPT RKQLPDYYKQ IAHPIDFDSI GKCLNKQGGY QTVWKFLLAC  1560
ELMLSNAQVY NEEHSELWED AATLRKAFIA ELKKVYPGHP YPKPMSVYDE EECQEPEWNR  1620
PEKKSGGMKV VVKAGGGGAA AQGLKVKMHN AGKGDALKVT MHKATDEPDP MPAFEDCGKC  1680
ATCTMARKSR AHRCLEVQMK EQLHLGHEGA KVAAKGAGAK GMKLEIYWPG DDSFYSGQVV  1740
GFDAVKLEHK IKYDAEGEEE HIALWGPEEV VKVKSSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4qy4_A2e-131487159511118SMARCA2 protein
4qy4_B2e-131487159511118SMARCA2 protein
4qy4_C2e-131487159511118SMARCA2 protein
5dkc_A2e-131487159511118Probable global transcription activator SNF2L2
5dkh_A2e-131487159511118Probable global transcription activator SNF2L2
5dkh_B2e-131487159511118Probable global transcription activator SNF2L2
5dkh_C2e-131487159511118Probable global transcription activator SNF2L2
6hax_A2e-131487159511118Probable global transcription activator SNF2L2
6hax_E2e-131487159511118Probable global transcription activator SNF2L2
6hay_A2e-131487159511118Probable global transcription activator SNF2L2
6hay_E2e-131487159511118Probable global transcription activator SNF2L2
6haz_A2e-131487159511118Probable global transcription activator SNF2L2
6haz_B2e-131487159511118Probable global transcription activator SNF2L2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503942.10.0bromodomain-containing protein
TrEMBLC1EAG20.0C1EAG2_MICCC; Bromodomain-containing protein
STRINGXP_002503942.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP636355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-09GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]