PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104615
Common NameMICPUN_104615
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HSF
Protein Properties Length: 428aa    MW: 44925.4 Da    PI: 6.9002
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104615genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.82.1e-30171062100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y  le+e+++++isws++g++f v+d ++f+++v+p++F h+nf+SFvRQLn YgF+kv++ +         w+F+++ F kg  e+l+ i+
        104615  17 FLHKVYMFLEEERYTDIISWSDDGKQFTVHDVNRFTTDVMPEHFSHTNFSSFVRQLNSYGFRKVDQGS---------WSFANPGFFKGGAENLKFIE 104
                   9***************************************************************9877.........******************** PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                   rk
        104615 105 RK 106
                   98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-3813106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3014106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.3E-2715106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.7E-141740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2617106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-145567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-146880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MATDVDDRRH FGPAPRFLHK VYMFLEEERY TDIISWSDDG KQFTVHDVNR FTTDVMPEHF  60
SHTNFSSFVR QLNSYGFRKV DQGSWSFANP GFFKGGAENL KFIERKGLDG GRGRGRGNAQ  120
GYAGTGAYGR LGRMAGTPAL GLNVGGGAMD GHLLQDNRQD TFEAIVTQQL QLSRIEMANL  180
MHRLTSVEKV QEQLLGILIN EQTMMLNGAS APTAAIPIPA TASTSTSLPA SVFSGLTGAA  240
AAMAVGSGMH GSIGPSGINI RGGILPAHLQ QHLQQHHMNQ QHAQQLHLNQ QQLQQLQQLQ  300
QLQSQQQQQQ LDLGGITIRE APLMQSQNAS ALAPKPEPAP PPPVNPNDPA SETLATISGL  360
SNQLVGVSPI LGLGLDSAGT GLDPGSGGGG GAGLAGGGGS LANGAGLNLG GLGAGLAAQP  420
GLMYPRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B7e-21171064104Putative transcription factor
5d5x_B7e-21171064104Putative transcription factor
5d5x_E7e-21171064104Putative transcription factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013340.0CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506739.10.0heat shock transcription factor
TrEMBLC1EJ890.0C1EJ89_MICCC; Heat shock transcription factor
STRINGXP_002506739.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-26heat shock transcription factor A2
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]