PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

102921

Common Name

MICPUN_102921

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

CPP

Protein Properties

Length: 621aa MW: 62888.8 Da PI: 9.3282

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
102921	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.7	2.6e-14	263	301	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 e+k+CnCkkskClk+YCeCfaag++C e C+C++C+N+++ 102921 263 ESKKCNCKKSKCLKLYCECFAAGVFCHE-CSCQNCQNTSD 301 579**********************9.******987 PP
2	TCR	53.1	6.5e-17	334	375	1	42
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++kkgC+Ckks ClkkYCeCf+ag+ C++ CkC++CkNke++ 102921 334 QHKKGCHCKKSACLKKYCECFQAGVLCQDYCKCDGCKNKEDN 375 689************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.6E-13	262	302	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.257	263	374	IPR005172	CRC domain
Pfam	PF03638	3.7E-12	265	299	IPR005172	CRC domain
SMART	SM01114	8.2E-17	334	375	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-12	336	373	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MHADQAVLAA VHALAQSPLR PGVLDDVTDV AQLRKQLETH FDVNLTEPEA AHAGMARALE 60 EELRQLDGEL ELEQHATRLV RGGDVAPSPG GNPNDARGAN GRRSLRGAAA RGATGPAGVG 120 AVAAQAAEES MKRSSTTGAS TEWPHGLAKT LKNDGRDSPR VQSSRGNGKK SANGNAGGVA 180 PGGGGGSKSK KAGAGGGGGG GSIERLDQSA NAGGRRGGAQ GASDRRLSVS AAATPAVKGE 240 RPAGPLTTPS PTKDGEDPSK SCESKKCNCK KSKCLKLYCE CFAAGVFCHE CSCQNCQNTS 300 DNAGLVQMTR QQIELRNPNA FADKIVASGD GGGQHKKGCH CKKSACLKKY CECFQAGVLC 360 QDYCKCDGCK NKEDNGQFGG RGGAAAAKPI RMPTLSGHGT QAAAIAAVEE AAMFMASEND 420 HHGLIMEDLM HMKSPGRVGL INAGLMSPGR FGMGLMSPGR GLVMSPGRAV LAAVDGLGLD 480 LLQSPPKAAP PEAATPAAGS NASGGSNSVG ATPMKARGET VSPLTPGSGR GTILRAGPGR 540 LTLTGGSAIN TRSKAPPPRF DGKPNANSAK GPMVTPTVTR SSRKTRSFGA MSGSHDAALA 600 GGMITTLGSP VPLSTPEGFE *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MHADQAVLAA VHALAQSPLR PGVLDDVTDV AQLRKQLETH FDVNLTEPEA AHAGMARALE  60
EELRQLDGEL ELEQHATRLV RGGDVAPSPG GNPNDARGAN GRRSLRGAAA RGATGPAGVG  120
AVAAQAAEES MKRSSTTGAS TEWPHGLAKT LKNDGRDSPR VQSSRGNGKK SANGNAGGVA  180
PGGGGGSKSK KAGAGGGGGG GSIERLDQSA NAGGRRGGAQ GASDRRLSVS AAATPAVKGE  240
RPAGPLTTPS PTKDGEDPSK SCESKKCNCK KSKCLKLYCE CFAAGVFCHE CSCQNCQNTS  300
DNAGLVQMTR QQIELRNPNA FADKIVASGD GGGQHKKGCH CKKSACLKKY CECFQAGVLC  360
QDYCKCDGCK NKEDNGQFGG RGGAAAAKPI RMPTLSGHGT QAAAIAAVEE AAMFMASEND  420
HHGLIMEDLM HMKSPGRVGL INAGLMSPGR FGMGLMSPGR GLVMSPGRAV LAAVDGLGLD  480
LLQSPPKAAP PEAATPAAGS NASGGSNSVG ATPMKARGET VSPLTPGSGR GTILRAGPGR  540
LTLTGGSAIN TRSKAPPPRF DGKPNANSAK GPMVTPTVTR SSRKTRSFGA MSGSHDAALA  600
GGMITTLGSP VPLSTPEGFE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-24	259	375	6	124	Protein lin-54 homolog
5fd3_B	6e-24	259	375	6	124	Protein lin-54 homolog
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001330	0.0	CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504796.1	0.0	tso1-like transcription factor
TrEMBL	C1EDG6	0.0	C1EDG6_MICCC; Tso1-like transcription factor
STRING	XP_002504796.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-18	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	102921
Entrez Gene	8247218

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]