PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

101672

Common Name

MICPUN_101672

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

CO-like

Protein Properties

Length: 571aa MW: 57658.7 Da PI: 6.7342

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
101672	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27	9.5e-09	2	44	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+++++ +++ fC++++ lC C +++Hk H++v 101672 2 VNCALCHNAPATVFCFNDNAQLCTGCDVQIHKTnkltwrHQRV 44 58*****************************888888888876 PP
2	zf-B_box	22.8	1.9e-07	44	87	3	38
zf-B_box 3 erkCpeHeeke..lqlfCedCqqllCedClleeHkg......Ht 38 + C+ +e ++ + fC +++ +lC++C +++Hk H+ 101672 44 VHLCEMCEGNPrhAVVFCAQDKAYLCQQCDVSIHKVnsiagnHE 87 5789999964445*********************6556666666 PP
3	CCT	67	5.2e-23	458	500	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R ++l+R+keKrk+R+F+K+irY+sRK++A++RpR+KG+Fvk 101672 458 RLERLRRWKEKRKNRNFNKTIRYQSRKVCADNRPRIKGKFVKV 500 889**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.456	1	46	IPR000315	B-box-type zinc finger
SMART	SM00336	3.9E-4	1	46	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-6	3	44	IPR000315	B-box-type zinc finger
CDD	cd00021	5.38E-7	4	44	No hit	No description
PROSITE profile	PS50119	9.655	42	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.8E-6	45	89	IPR000315	B-box-type zinc finger
CDD	cd00021	4.35E-6	46	78	No hit	No description
SMART	SM00336	0.0047	47	91	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.872	458	500	IPR010402	CCT domain
Pfam	PF06203	2.6E-18	458	500	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MVNCALCHNA PATVFCFNDN AQLCTGCDVQ IHKTNKLTWR HQRVHLCEMC EGNPRHAVVF 60 CAQDKAYLCQ QCDVSIHKVN SIAGNHERRA VGPFTEEQLA GSGGSGSLGD DQFLELLESG 120 GPGGDAFVGL PDISEDGGLW DPNGAESGAF LAEVEAGDDH AGRSSKDKNA RASGNNADAA 180 RQPTGSQGSR GSGGSGGGGR AGSSQASGAV VGGRASVDGA TGGGSHRGGT AGDGEFALNI 240 DDYAQLDRMG NMDDLLGPIL DDGALGGPGG FMGYEGHPGF HHNSSMGGAM GGASGTNKAG 300 TNAPGGIGRQ FGQIAQSLSG DRGGGAVSGG SGGSGGGGGK GASEVKSEPT NRGGGGGAAH 360 QMPPHHYMHH PMAPGTHGMP PPPMMGGPGG GPGGPMPPGM QAMPPGTHGM PPPPGAMGGH 420 GPPPGQPVQG PNGVMYFPGP HLPVLHLANG GSNKPPSRLE RLRRWKEKRK NRNFNKTIRY 480 QSRKVCADNR PRIKGKFVKV GSTPDLGALD LLGDDEGPTQ AGPETLSDVE EDSFDSDPAP 540 PPGALARTAG LRRDGGLTAA MSVPDLSRLG *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MVNCALCHNA PATVFCFNDN AQLCTGCDVQ IHKTNKLTWR HQRVHLCEMC EGNPRHAVVF  60
CAQDKAYLCQ QCDVSIHKVN SIAGNHERRA VGPFTEEQLA GSGGSGSLGD DQFLELLESG  120
GPGGDAFVGL PDISEDGGLW DPNGAESGAF LAEVEAGDDH AGRSSKDKNA RASGNNADAA  180
RQPTGSQGSR GSGGSGGGGR AGSSQASGAV VGGRASVDGA TGGGSHRGGT AGDGEFALNI  240
DDYAQLDRMG NMDDLLGPIL DDGALGGPGG FMGYEGHPGF HHNSSMGGAM GGASGTNKAG  300
TNAPGGIGRQ FGQIAQSLSG DRGGGAVSGG SGGSGGGGGK GASEVKSEPT NRGGGGGAAH  360
QMPPHHYMHH PMAPGTHGMP PPPMMGGPGG GPGGPMPPGM QAMPPGTHGM PPPPGAMGGH  420
GPPPGQPVQG PNGVMYFPGP HLPVLHLANG GSNKPPSRLE RLRRWKEKRK NRNFNKTIRY  480
QSRKVCADNR PRIKGKFVKV GSTPDLGALD LLGDDEGPTQ AGPETLSDVE EDSFDSDPAP  540
PPGALARTAG LRRDGGLTAA MSVPDLSRLG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001328	0.0	CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504098.1	0.0	predicted protein
TrEMBL	C1EBC1	0.0	C1EBC1_MICCC; Uncharacterized protein
STRING	XP_002504098.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP611	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.2	6e-25	DBB family protein

Link Out ? help Back to Top
Phytozome	101672
Entrez Gene	8245039

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]