PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 101075
Common NameMICPUN_101075
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 411aa    MW: 44006.7 Da    PI: 10.1851
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
101075genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.2e-1183127149
     AP2   1 sgykGVrwdkk.rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
             s+ykGV++dk+ +g++ ++Ir       + + ++lg++g++eeAa+a+++a
  101075  83 SKYKGVYRDKNvSGKYKCSIRR------KeREVHLGYYGSEEEAARAYDKA 127
             89*******986899*******......44*******************97 PP
2AP226.22e-08179227154
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
             s+y+GV+  kk+++++AeI+         k+ slg++  + +A +a+++a   ++
  101075 179 SKYRGVCKEKKTQKFRAEIQI------AgKKESLGYHANEMDAVRAYDRALIVMK 227
             89*****************99......33999*******66********987665 PP
3AP239.21.8e-12273323250
     AP2   2 gykGVrwdkkrgr.......WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
              ++GVr++  +++       W+AeI +      + k+ slg+++t eeAa+a+++a 
  101075 273 NFRGVRRYTHKQKndqlnvkWRAEITV------NgKKKSLGYHDTQEEAARAYDKAV 323
             69***999999999*************......44*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1283138IPR016177DNA-binding domain
PfamPF008473.4E-783127IPR001471AP2/ERF domain
PROSITE profilePS5103211.99684141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1084138IPR001471AP2/ERF domain
SMARTSM003801.5E-484145IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-10179237IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-10180236IPR001471AP2/ERF domain
SMARTSM003806.9E-6180242IPR001471AP2/ERF domain
PROSITE profilePS5103211.285180236IPR001471AP2/ERF domain
CDDcd000182.08E-11272338No hitNo description
PfamPF008474.2E-7273322IPR001471AP2/ERF domain
PROSITE profilePS5103213.366273337IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-10273338IPR001471AP2/ERF domain
SMARTSM003802.8E-5273343IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-10273337IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVVDKVPAKA AMKAAAPGKR KAPEESTVWD PSSKSPKPDS NGGSADHQQI SGANALAVVD  60
PSAIGGAMVP DGKLKGKVAR GGSKYKGVYR DKNVSGKYKC SIRRKEREVH LGYYGSEEEA  120
ARAYDKAHWC CKSSTKNFDI STYDAEEMAK IKEMPSNDLT ELRKHLGVGL SKEGKEGSSK  180
YRGVCKEKKT QKFRAEIQIA GKKESLGYHA NEMDAVRAYD RALIVMKGDK AKTNLPIEQY  240
DAERAKLAAY DFNEFQAKEI ETKSHRNANW TSNFRGVRRY THKQKNDQLN VKWRAEITVN  300
GKKKSLGYHD TQEEAARAYD KAVVSQPGFK RHWLNFPEGA LPAPAPAAAL PAPGDAPGGA  360
GGGARGAAGG AGGVKARGGL KAKKAAAAAA AGVKEEAGRP EGGFLASLAE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002502925.10.0predicted protein
TrEMBLC1E8N30.0C1E8N3_MICCC; Uncharacterized protein
STRINGXP_002502925.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-17AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]