PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 100424
Common NameIRE1, MICPUN_100424
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 1054aa    MW: 109419 Da    PI: 6.9532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
100424genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-0910231048126
               --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
               ++++ C f+ +tG Ck+G+ CkF+H+
   100424 1023 PGEPDCVFWIKTGRCKFGAGCKFNHP 1048
               5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0056424274IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
CDDcd092132.96E-7549425No hitNo description
SuperFamilySSF509987.53E-1353241IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.140.10.108.3E-125689IPR027295Quinoprotein alcohol dehydrogenase-like domain
PfamPF133606.7E-756238IPR002372Pyrrolo-quinoline quinone repeat
Gene3DG3DSA:2.140.10.108.3E-12144242IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM005640.0015146178IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM005640.0021206238IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
PROSITE profilePS5001133.474555838IPR000719Protein kinase domain
SMARTSM002202.2E-30555838IPR000719Protein kinase domain
SuperFamilySSF561122.05E-47559840IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.209.9E-14560634No hitNo description
PfamPF000697.0E-31560837IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.107.5E-37653851No hitNo description
PROSITE patternPS001080689701IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139234.907841975IPR010513KEN domain
CDDcd104225.07E-51842973No hitNo description
PfamPF064791.1E-37844973IPR010513KEN domain
SMARTSM005801.6E-14906960IPR018997PUB domain
PROSITE profilePS5010314.0810221050IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-410221049IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-510241048IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1054 aa     Download sequence    Send to blast
MGRLLSPAPT LWLVCIASML ATASVEGKPT AIKRAGGRRL AEATDAGEPL LVSLLDGTVR  60
AVDRSSGETL WTFSSGGPLV QAHRSVSDGP DGGGGVAIRG RTNPTVFPGI DGSLYAYGGG  120
HGSGSGGTGE VSRLPVTARQ LVEASPSVTR DGGVVMGTRR SVVFAVDKRT GELLRSFDTD  180
GTVVHGGNDD TGFFLSNESP TGDPTPNDVN DEAFYIGRTE YVVRSVDSST GRERWNVTYG  240
EVTPLTSTAQ GGGGRGGPLF LRRGDTAGDG DGDAGDGSSA PRLEWGPGNS IACAGGAGHA  300
HAWTAHMPST PVAVHDGRTG RAIKGGSPGV GGGGDGGAGG GDILVGAHGG GLFALPSTDG  360
GKTRGLSLGV PGDSLGTVGA LVPVAVSPTV RPDDDWACIP EKLWDDALTP GGLDSFLALH  420
GVSGIGLSTD GGLALLTPLQ RAVGSPVGAA VVVTVAVGFG TLVSYAALIA RSRLNGLNGG  480
SNSGSNGSNG SKRGSRGKNR GRRNKGKGGV GGVGGVGRVG DDEAADEVPV ATADRGNPPE  540
PLRSDSGAVR VGRLSVGPGI LGYGSCGTIV FEGELDGRPV AVKRLLAQFH ELARAELATL  600
ISSDEHPNVL RCFAMEEDAD FVYVALERCS SALASVVDGG SMGVGLDLAT KDGDAFDLVD  660
PSTGRPTSEG MTLMRDVCEG LHALHSRGIV HRDLKPQNVL VTPQRRGKLA DMGLAKRLGV  720
GVGSDVSFET HLAGVGGTDH HHAGSGTAGW QAPERLLRGK QARSVDTFAL GCLMHYCLTG  780
GEHPFGERYE RDANVIKGNA NLAAVGHMPE AADLIGKLIA RDADARPSSA EVLLHPFWWS  840
DAKKLTFLSD VSDRVEMEDR EVGGKRLLGS LERDAMKNAL GGGEWVPKLD PSLLENLGRY  900
RKYNAAAVRD LLRVIRNKMS HFRELPAKVQ ATVGSPPDAF YRYFATRFPG LLLHAYAFAA  960
RECAHESMFR RYFFPHEEDT RCSGEALASL ERASAAVAAK AAERAARREA TNDRTSVEYP  1020
VRPGEPDCVF WIKTGRCKFG AGCKFNHPSG LHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G3e-9355197431447Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013260.0CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002502437.10.0Endoribonuclease/protein kinase
TrEMBLC1E5U80.0C1E5U8_MICCC; Endoribonuclease/protein kinase
STRINGXP_002502437.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-11floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]