PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69288

Common Name

MICPUCDRAFT_69288

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

bZIP

Protein Properties

Length: 371aa MW: 38581.8 Da PI: 7.9145

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69288	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.6	2.3e-07	197	239	3	42
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 ++ + +r+++NR+A+ r+R++ k+++ eL + v +L e 69288 197 KDPKYKRRIQNRLASARFRAKAKERQTELDRlkhQVTQLRREK 239 67889****************9999888754111444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-6	197	246	No hit	No description
Pfam	PF07716	9.1E-6	198	248	IPR004827	Basic-leucine zipper domain
CDD	cd14686	6.12E-7	200	245	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MERQSSLNAH LPGDLPGDDF AGHVASIVQS PSREPLPGLD PVTGRRTSDD NMNTAFDDLL 60 AGIPEGGGGE GGGGGGGGGV MRGQSALDRM PSIPADAGRF FDEKDLMQLD GMLDFDVDAD 120 AAAGGFSHGA GGGNGGGNAP SYHTGGTSGG NGGGYTSGAT SEGSPSHGGG GSSGGHGGGH 180 GGGSEDYGDL AHGLDPKDPK YKRRIQNRLA SARFRAKAKE RQTELDRLKH QVTQLRREKF 240 DLESQCGAAE DVHHGVDRGP LLAETESALQ DARELGAVDG ERELQARDDG DGVAGEGSRG 300 RAEEGGGGER SVRARGRRGR VQRATELEPG GRVARRRRRR ERRRRRRRDG RRSRGRAAGV 360 AEELSGRGVR *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MERQSSLNAH LPGDLPGDDF AGHVASIVQS PSREPLPGLD PVTGRRTSDD NMNTAFDDLL  60
AGIPEGGGGE GGGGGGGGGV MRGQSALDRM PSIPADAGRF FDEKDLMQLD GMLDFDVDAD  120
AAAGGFSHGA GGGNGGGNAP SYHTGGTSGG NGGGYTSGAT SEGSPSHGGG GSSGGHGGGH  180
GGGSEDYGDL AHGLDPKDPK YKRRIQNRLA SARFRAKAKE RQTELDRLKH QVTQLRREKF  240
DLESQCGAAE DVHHGVDRGP LLAETESALQ DARELGAVDG ERELQARDDG DGVAGEGSRG  300
RAEEGGGGER SVRARGRRGR VQRATELEPG GRVARRRRRR ERRRRRRRDG RRSRGRAAGV  360
AEELSGRGVR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	183	SGGHGGGHGGGS
2	334	341	RRRRRRER
3	335	342	RRRRRERR
4	337	347	RRRERRRRRRR
5	338	345	RRERRRRR
6	338	346	RRERRRRRR
7	339	347	RERRRRRRR
8	340	348	ERRRRRRRD
9	341	347	RRRRRRR
10	341	348	RRRRRRRD
11	342	350	RRRRRRDGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060500.1	0.0	predicted protein
TrEMBL	C1MY40	0.0	C1MY40_MICPC; Predicted protein
STRING	XP_003060500.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15437	2	2

Link Out ? help Back to Top
Phytozome	69288
Entrez Gene	9686243

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]