PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 69285 | ||||||||
Common Name | MICPUCDRAFT_69285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 339aa MW: 37130 Da PI: 6.2893 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 250 | 300 | 8 | 55 |
-HHHHHHHHHHHHHS...SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFekn...rypsaeereeLAkklgLterqVkvWFqNrRake 55 ++ +e+L++ n +yps+++++ L+k+++L+ +q+ +WF N+R ++ 69285 250 PTDATEALKKWWSDNvvwPYPSEDDKRALSKSTNLSATQINNWFINQRKRH 300 5666777777777532338*****************************885 PP | |||||||
2 | ELK | 24.2 | 8e-09 | 220 | 241 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +L++ L+rKY+ +++sL+ EF+ 69285 220 DLRKSLKRKYATSISSLRDEFL 241 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 2.0E-7 | 220 | 241 | IPR005539 | ELK domain |
SMART | SM01188 | 9.6E-4 | 220 | 241 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.516 | 220 | 240 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.698 | 240 | 303 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-13 | 242 | 307 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-17 | 242 | 307 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.12E-12 | 243 | 303 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 245 | 304 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-17 | 260 | 299 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MRVHTMYPAL LRAYFACRSA GADRATELAL RRRRDALLED ARVRREENAQ NASGFFDAHT 60 HGQGGEEMDD FIARCTAELR AYSVELNAIA RESEDACAEF ERRVATITAS AAKIKIDDER 120 ARERGGGGGT PADAARGVDD DTVYDDEDEF GDDDDDDDDD ESTDASAWVR KQRKRAAAAA 180 AAAAAAAAGG GSKKPPAAPD AAAAAGPSLT AKHVDTREDD LRKSLKRKYA TSISSLRDEF 240 LRKRKKGKLP TDATEALKKW WSDNVVWPYP SEDDKRALSK STNLSATQIN NWFINQRKRH 300 WHKLFKGVTQ PASEEEAAVA LRRAFGTLEK ALEVARAS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 225 | 245 | KRKYATSISSLRDEFLRKRKK |
2 | 241 | 245 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003060802.1 | 0.0 | knox-like protein | ||||
TrEMBL | C1MY32 | 0.0 | C1MY32_MICPC; Knox-like protein | ||||
STRING | XP_003060802.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5451 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-27 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 69285 |
Entrez Gene | 9685934 |
Publications ? help Back to Top | |||
---|---|---|---|
|