PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 69285
Common NameMICPUCDRAFT_69285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family TALE
Protein Properties Length: 339aa    MW: 37130 Da    PI: 6.2893
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
69285genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-09250300855
               -HHHHHHHHHHHHHS...SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox   8 tkeqleeLeelFekn...rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                ++ +e+L++    n   +yps+++++ L+k+++L+ +q+ +WF N+R ++
     69285 250 PTDATEALKKWWSDNvvwPYPSEDDKRALSKSTNLSATQINNWFINQRKRH 300
               5666777777777532338*****************************885 PP

2ELK24.28e-09220241122
    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
            +L++ L+rKY+ +++sL+ EF+
  69285 220 DLRKSLKRKYATSISSLRDEFL 241
            69*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.0E-7220241IPR005539ELK domain
SMARTSM011889.6E-4220241IPR005539ELK domain
PROSITE profilePS512139.516220240IPR005539ELK domain
PROSITE profilePS5007112.698240303IPR001356Homeobox domain
SMARTSM003894.2E-13242307IPR001356Homeobox domain
SuperFamilySSF466891.75E-17242307IPR009057Homeodomain-like
CDDcd000865.12E-12243303No hitNo description
Gene3DG3DSA:1.10.10.606.0E-25245304IPR009057Homeodomain-like
PfamPF059207.9E-17260299IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRVHTMYPAL LRAYFACRSA GADRATELAL RRRRDALLED ARVRREENAQ NASGFFDAHT  60
HGQGGEEMDD FIARCTAELR AYSVELNAIA RESEDACAEF ERRVATITAS AAKIKIDDER  120
ARERGGGGGT PADAARGVDD DTVYDDEDEF GDDDDDDDDD ESTDASAWVR KQRKRAAAAA  180
AAAAAAAAGG GSKKPPAAPD AAAAAGPSLT AKHVDTREDD LRKSLKRKYA TSISSLRDEF  240
LRKRKKGKLP TDATEALKKW WSDNVVWPYP SEDDKRALSK STNLSATQIN NWFINQRKRH  300
WHKLFKGVTQ PASEEEAAVA LRRAFGTLEK ALEVARAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225245KRKYATSISSLRDEFLRKRKK
2241245RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060802.10.0knox-like protein
TrEMBLC1MY320.0C1MY32_MICPC; Knox-like protein
STRINGXP_003060802.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-27KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]