PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

63688

Common Name

MICPUCDRAFT_63688

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

bZIP

Protein Properties

Length: 506aa MW: 51414.2 Da PI: 5.3188

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
63688	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.7e-11	1	41	10	50
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + +NRe+ArrsR+RK+ + L+ kv++L+ae +L l 63688 1 MLSNRESARRSRRRKQSHLGDLQAKVDALQAEKNDLSRALR 41 579*******************************9996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-4	1	56	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.4E-8	1	41	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	1	44	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-8	1	43	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-7	3	44	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MLSNRESARR SRRRKQSHLG DLQAKVDALQ AEKNDLSRAL RAMQFNFQRA LERNRYAKRS 60 LSYLREQVMS DRTLSREAIV AATTAVMMER APAPQGEPCV GGGGYGGALE AATAGAGDAP 120 SAAARRPAAA APVAAEDDAI DHHHHRGHHG THPVLRQMNM HDARANGLFG VGGASAGFAS 180 LGFVGAVDSG PGPSLGFSGA GDSATTTTTG PSFTSPGGFL GRGSIGGSFQ GGFRGVIGDG 240 HEGLILPSSG DDGVRGGIGV GGVGGGTSSD AEAAAVVSRR FHAMPFPGPL GAGDDDDDDA 300 LAAAAAAARG AREPSHGGSS GNSEYDAVAF RAEDGKGGDG DGDDDDDDDD DPLDTLLRSC 360 TNVDVAAADD ALEPIAWVAG VIDPDVVDPA GGGGGGSAEK TRAAAATKSL RNGVHHANAV 420 VWEPVTTTTT TETEDAPSLL ESPPPPPSTT TRPINNKKMD RSDSMNRVAS LERMNYQKTR 480 TATRGGSPSP LGDPQRKASA ASAIA*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MLSNRESARR SRRRKQSHLG DLQAKVDALQ AEKNDLSRAL RAMQFNFQRA LERNRYAKRS  60
LSYLREQVMS DRTLSREAIV AATTAVMMER APAPQGEPCV GGGGYGGALE AATAGAGDAP  120
SAAARRPAAA APVAAEDDAI DHHHHRGHHG THPVLRQMNM HDARANGLFG VGGASAGFAS  180
LGFVGAVDSG PGPSLGFSGA GDSATTTTTG PSFTSPGGFL GRGSIGGSFQ GGFRGVIGDG  240
HEGLILPSSG DDGVRGGIGV GGVGGGTSSD AEAAAVVSRR FHAMPFPGPL GAGDDDDDDA  300
LAAAAAAARG AREPSHGGSS GNSEYDAVAF RAEDGKGGDG DGDDDDDDDD DPLDTLLRSC  360
TNVDVAAADD ALEPIAWVAG VIDPDVVDPA GGGGGGSAEK TRAAAATKSL RNGVHHANAV  420
VWEPVTTTTT TETEDAPSLL ESPPPPPSTT TRPINNKKMD RSDSMNRVAS LERMNYQKTR  480
TATRGGSPSP LGDPQRKASA ASAIA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	RRSRRRKQ
2	10	15	SRRRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063376.1	0.0	predicted protein
TrEMBL	C1N5J9	0.0	C1N5J9_MICPC; Predicted protein
STRING	XP_003063376.1	0.0	(Micromonas pusilla)

Link Out ? help Back to Top
Phytozome	63688
Entrez Gene	9688611

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]