PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63447
Common NameMICPUCDRAFT_63447
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 521aa    MW: 58339.9 Da    PI: 7.1352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63447genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.9e-10102145245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W ++E+ ll++a++ +G g+W+ +a+++g  ++  qc ++++
            63447 102 MDWGADEEVLLLEAIEIYGLGNWTEVAEHVGGAKSKMQCHDHYF 145
                      57*****************************88999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250246.8E-13932507IPR016827Transcriptional adaptor 2
SMARTSM002913.4E-74085IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.254087IPR000433Zinc finger, ZZ-type
PfamPF005693.3E-84384IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.53E-1244107No hitNo description
CDDcd023354.47E-214492No hitNo description
SuperFamilySSF466892.81E-1196151IPR009057Homeodomain-like
PROSITE profilePS5129319.04499152IPR017884SANT domain
SMARTSM007172.5E-7100150IPR001005SANT/Myb domain
PfamPF002491.4E-9102145IPR001005SANT/Myb domain
CDDcd001671.49E-8104144No hitNo description
Gene3DG3DSA:1.10.10.602.1E-7104146IPR009057Homeodomain-like
PROSITE profilePS509348.706420515IPR007526SWIRM domain
SuperFamilySSF466892.15E-18421506IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGGPGGGPSG FGAGGFHQQP KRRRCPTENA MTKVNPSEPK RALFHCNYCQ KDISNVVRIK  60
CAECAEMDLC AECFSVGVEP HPHKACHPYH VIDNISFPLF TMDWGADEEV LLLEAIEIYG  120
LGNWTEVAEH VGGAKSKMQC HDHYFETYVN SPTTPLPDMK RLLGKDYVKE EPKDAEEGKK  180
RGKTDPEDAE RERTLASFSR PGDERHWGNA QDLTGYNVKR DEFDPEYDVE AELPLAEMEF  240
RDTDTELDRK LKLRMIEIYN RRLEERRKRK QFIIDRGLLN VKRQQALERK RTPQERDIHA  300
AVRVFARFLE PNEYEIMLEG LAAESRIRNR IAELKEYRRA GCRTIREGEQ YDSDKRARIA  360
EHARIRAAET PAKGAAAAAA ARANKYLSRD GFVAAPPGAP GGEPPKPGAG AGASSGGGGG  420
GRRKAPLPLD LAKLPGVELL SKREQDLCTH NRLLPVQYLA MKEAMMRASA DGEPLRRADV  480
RYKFAVEPVK ATRTYELLLS NGWITDPNGG KDAEKEQDDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C8e-31441595119Transcriptional adapter 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060975.10.0histone acetyltransferase complex component
TrEMBLC1MZL70.0C1MZL7_MICPC; Transcriptional adapter
STRINGXP_003060975.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP187466
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]