PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62997
Common NameMICPUCDRAFT_62997
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family WRKY
Protein Properties Length: 326aa    MW: 33544.3 Da    PI: 10.8488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29461160
           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
   WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
           +dDgy+WrKYGqK +kg++fprsYYrCtsa+Cp++k+ve +     +   tYegeHnhek
  62997  4 VDDGYRWRKYGQKIIKGAPFPRSYYRCTSANCPARKHVEGDP--SLLSSLTYEGEHNHEK 61
           59*************************************988..677899********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.716162IPR003657WRKY domain
SMARTSM007741.4E-33461IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26462IPR003657WRKY domain
SuperFamilySSF1182901.14E-23462IPR003657WRKY domain
PfamPF031062.2E-24560IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPGVDDGYRW RKYGQKIIKG APFPRSYYRC TSANCPARKH VEGDPSLLSS LTYEGEHNHE  60
KPAPGRNANG SVKKKTGPSG DSASKPAFKK PAPLTVSDRN SSHRARDGRG LTPGSRGGQL  120
DRAFTPRFWD KAEARAVETL EALSPRSRDR ASRIARDAAI AAAEKANPGR AHRGGGGGSN  180
APTPGGSQFL GDLPSALPSG RRDGKRARGG DGDGGGGGGG DGDGGGGGGG DGGPRSVASR  240
KKLRRPPALK LCSDLSAPDE AGTPLLALGG SDGGVVGNVP GLRSDGRSLR KAVLEKWVTS  300
PRDPVPTPNT AETPLDPLAF LTTPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-214631778Probable WRKY transcription factor 4
2lex_A6e-214631778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061495.10.0WRKY transcription factor
TrEMBLC1N1200.0C1N120_MICPC; WRKY transcription factor
STRINGXP_003061495.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-21zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]