PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

62878

Common Name

MICPUCDRAFT_62878

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

G2-like

Protein Properties

Length: 345aa MW: 34180.4 Da PI: 6.0193

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
62878	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.7e-28	60	113	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl+WtpeLH rF++av++L G+ +A+Pktil+lm+v+g+t+e+v+SHLQkYRl 62878 60 KRRLVWTPELHVRFMSAVNHL-GITNAVPKTILQLMNVEGMTRENVASHLQKYRL 113 68*****************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.524	57	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-29	58	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-19	58	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	60	113	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-6	63	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGTSHDDGDA GADADADADA DADADADADA AETETATTVT GEKRVSDGEK EATSGRATKK 60 RRLVWTPELH VRFMSAVNHL GITNAVPKTI LQLMNVEGMT RENVASHLQK YRLYLKRLAG 120 VPPNAPLPPD VMRRAHPYHF PAAAAFPPPT PTIEQMHAGL PPSMPSMQSM PSMQSMPATM 180 PNMSALMQMP AYNSAMGAMG AAMGGMGGMY ASWPPAPPAC AGSGAATMGL PGASASDPYG 240 AAAAQSFMNY VANYRPGGGV PGKDASSSAA AAAAAAAMAS HGWGFPGHAG GAWSAGAGAA 300 ATSAAMTSAA MTSAAMTSAA AASAIADGGC SAPAAGGPDA GGGK*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGTSHDDGDA GADADADADA DADADADADA AETETATTVT GEKRVSDGEK EATSGRATKK  60
RRLVWTPELH VRFMSAVNHL GITNAVPKTI LQLMNVEGMT RENVASHLQK YRLYLKRLAG  120
VPPNAPLPPD VMRRAHPYHF PAAAAFPPPT PTIEQMHAGL PPSMPSMQSM PSMQSMPATM  180
PNMSALMQMP AYNSAMGAMG AAMGGMGGMY ASWPPAPPAC AGSGAATMGL PGASASDPYG  240
AAAAQSFMNY VANYRPGGGV PGKDASSSAA AAAAAAAMAS HGWGFPGHAG GAWSAGAGAA  300
ATSAAMTSAA MTSAAMTSAA AASAIADGGC SAPAAGGPDA GGGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-27	62	116	3	57	Transcription factor LUX
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061410.1	0.0	g2-like myb-family transcription factor
TrEMBL	C1N0L8	0.0	C1N0L8_MICPC; G2-like myb-family transcription factor
STRING	XP_003061410.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59570.1	1e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	62878
Entrez Gene	9687104

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]